Miyakogusa Predicted Gene

Lj3g3v2785700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2785700.1 Non Chatacterized Hit- tr|E1ZQ67|E1ZQ67_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,41.35,3e-17,seg,NULL; PSII_Pbs27,Photosystem II
Pbs27,CUFF.44639.1
         (151 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g32970.1                                                       187   4e-48
Glyma13g37510.1                                                       179   7e-46

>Glyma12g32970.1 
          Length = 173

 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 107/174 (61%), Positives = 116/174 (66%), Gaps = 24/174 (13%)

Query: 1   MASPTLITPTSTPKSLPPIKPRPTTAIAA-------------------SFLS----GTWL 37
           MASPTLITP S  KSL PIKP+PTT IAA                    FLS     TWL
Sbjct: 1   MASPTLITPKSV-KSLTPIKPKPTTTIAATLTPPTTTSTAAATHPRRREFLSIITATTWL 59

Query: 38  CHVTPALAAXXXXXXXXXXXVINKVRTTITMDKNDPNVADAVADLRDSSNSWVAKYRKEK 97
             ++PALA+           VINKVRTTI MDKNDPNVA AVA+LR++SNSWVAKYR+EK
Sbjct: 60  VPLSPALASSDEEYMKETEEVINKVRTTIVMDKNDPNVATAVAELRETSNSWVAKYRREK 119

Query: 98  ALLARVSFRDVYSALNAVSGHYISFGPTAPIPAKRRARIXXXXXXXXXXXXRGR 151
           ALL RVSFRD+YSALNAVSGHYISFGPTAPIPAKRRARI            RGR
Sbjct: 120 ALLGRVSFRDMYSALNAVSGHYISFGPTAPIPAKRRARILEEVDTAEKALLRGR 173


>Glyma13g37510.1 
          Length = 169

 Score =  179 bits (455), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 112/170 (65%), Gaps = 20/170 (11%)

Query: 1   MASPTLITPTSTPKSLPPIKPR-------------PTTAI------AASFLSGTWLCHVT 41
           MASPTLITP S  KSL PIKP+             P+T          S ++ TWL  ++
Sbjct: 1   MASPTLITPKSV-KSLSPIKPKATTTTTTIAATLTPSTTTHPRRRELLSIITTTWLLPLS 59

Query: 42  PALAAXXXXXXXXXXXVINKVRTTITMDKNDPNVADAVADLRDSSNSWVAKYRKEKALLA 101
           PALA+           VINKVRTTI MDKNDPNVA AVA+LR++SNSWVAKYR+EKALL 
Sbjct: 60  PALASSDEEYVKETEEVINKVRTTIVMDKNDPNVATAVAELRETSNSWVAKYRREKALLG 119

Query: 102 RVSFRDVYSALNAVSGHYISFGPTAPIPAKRRARIXXXXXXXXXXXXRGR 151
           R SFRD+YSALNAVSGHYISFGPTAPIPAKRRARI            RGR
Sbjct: 120 RASFRDIYSALNAVSGHYISFGPTAPIPAKRRARILEEVDTAEKALLRGR 169