Miyakogusa Predicted Gene

Lj3g3v2779500.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2779500.1 Non Chatacterized Hit- tr|G7L312|G7L312_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,52.34,1e-17,Translation proteins,Translation
elongation/initiation factor/Ribosomal, beta-barrel; Gar1,H/ACA
rib,CUFF.44617.1
         (704 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g11810.1                                                       276   6e-74
Glyma06g45170.1                                                       244   3e-64

>Glyma12g11810.1 
          Length = 401

 Score =  276 bits (706), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 160/305 (52%), Positives = 191/305 (62%), Gaps = 22/305 (7%)

Query: 175 PVMSKNDDELEVLPWVPPVNVTLGPHHQMLPVGVVMSILGAQVIVEGVEKHDPLNEGSIL 234
           P+ SKN  EL+ LP VPPV+VTL PHHQ LPVG+V SILGAQVIVEGVEKH PLNEGSIL
Sbjct: 21  PIRSKN--ELQNLPPVPPVDVTLEPHHQTLPVGIVTSILGAQVIVEGVEKHGPLNEGSIL 78

Query: 235 WMTESRRPLGFIEEIFGPVEHPYYIVRYNSENEVPEGIRGGTLISFVPEFANHVLRDEEL 294
           W+TESR+PLG I+EIFGPV++PYY+VRYNSE+EVP GI  GTLISFVPEFA+HVL +++L
Sbjct: 79  WLTESRKPLGLIDEIFGPVKNPYYVVRYNSESEVPTGIHEGTLISFVPEFADHVLNNKDL 138

Query: 295 YKKGYXXXXXXXXXXXXX------GKEAEYKRMQTMAKRGIQDQNPGKRKNNRNEVPSRN 348
           Y+KGY                    KEAEYKRMQ   KRG  DQN GK+KNNR +   + 
Sbjct: 139 YRKGYDASGADDEELSDEMEFSDDEKEAEYKRMQKQTKRGANDQNHGKKKNNRKKFSPKE 198

Query: 349 AFVPTLPVAPATSLPDHGHYSSIPGPGGQGHFSASXXXXXXXXXXXXXLTTSGVGTSGTA 408
              PT+  AP        H+ + P   G G                    T+GV T+GT 
Sbjct: 199 HAAPTIHAAPML------HHGNCPPFSGTGQGLMGGTTPLPPLNVAPTFATNGVWTNGTT 252

Query: 409 LPQQFAVP--PNGFPTNDVSWYQGNTQNFHQFPAPGIPFQQQLNSVHGYPNNTQISHQVP 466
            P Q   P  PNG+PTN + WY  N Q   QFP PGIPFQQQL     +PN   +   + 
Sbjct: 253 FPHQQQSPMLPNGYPTNGMPWYPQNPQISPQFPMPGIPFQQQL-----HPNQGSLPTTM- 306

Query: 467 VPGIP 471
           +PG+P
Sbjct: 307 LPGMP 311



 Score = 86.7 bits (213), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 78/153 (50%), Gaps = 31/153 (20%)

Query: 579 FPFQQQ---------LNPVHGYPNNTQISHQFPVQGTLFQQQSNPVNGFPPATTFPGAQP 629
           FP QQQ          N +  YP N QIS QFP+ G  FQQQ +P  G  P T  PG  P
Sbjct: 253 FPHQQQSPMLPNGYPTNGMPWYPQNPQISPQFPMPGIPFQQQLHPNQGSLPTTMLPG-MP 311

Query: 630 NMFAQPMYAQRPVNQNQITPGLSTPFPQDQSP------------------INMHSSFISG 671
           +MFAQ  YA     QNQ+  G+ +PFPQ Q P                  +N HS+ ISG
Sbjct: 312 DMFAQSQYAAGLAGQNQMAFGMGSPFPQSQPPMFAAQQGFPSTELHSQRNLNFHSNTISG 371

Query: 672 NQHAPHQFNPGPSANYRRKKYNRPGKRGWRPGK 704
              A  QF+P  +AN  RK ++  G++GWRP K
Sbjct: 372 ---ARSQFHPRSNANRGRKTFHGAGRKGWRPPK 401


>Glyma06g45170.1 
          Length = 544

 Score =  244 bits (622), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 149/291 (51%), Positives = 183/291 (62%), Gaps = 27/291 (9%)

Query: 175 PVMSKNDDELEVLPWVPPVNVTLGPHHQMLPVGVVMSILGAQVIVEGVEKHDPLNEGSIL 234
           P+ SKN  EL++  W    N T+    +  PVG+VMS LGAQVIVEGVEKHDPLNEGSIL
Sbjct: 171 PIRSKN--ELQMRFW----NHTI----KRCPVGIVMSTLGAQVIVEGVEKHDPLNEGSIL 220

Query: 235 WMTESRRPLGFIEEIFGPVEHPYYIVRYNSENEVPEGIRGGTLISFVPEFANHVLRDEEL 294
           W+TES++PLG I+EIFGPV++PYY+VRYNSE+EVP GI  GTLISFVPEFA+HV+ +++L
Sbjct: 221 WLTESQKPLGLIDEIFGPVKNPYYVVRYNSESEVPTGINEGTLISFVPEFADHVINNKDL 280

Query: 295 YKKGYXXXXXXXXXXXXX------GKEAEYKRMQTMAKRGIQDQNPGKRKNNRNEVPSRN 348
           Y+KGY                    KEAEYKRMQ   KRG  DQN GK+KNNR +   ++
Sbjct: 281 YRKGYDASGADDEELSDEMEFSDDEKEAEYKRMQKQTKRGANDQNHGKKKNNRKKFSPKD 340

Query: 349 AFVPTLPVAPATSLPDHGH---YSSIPGPGGQGHFSASXXXXXXXXXXXXXLTTSGVGTS 405
              P+ P AP+  +  HG+   +SSI     QGH   +               T+GV T+
Sbjct: 341 VAAPSAPAAPSVPMLHHGNCPPFSSI----AQGHLGGT--TPLPPLNAAPNFATNGVWTT 394

Query: 406 GTALPQQFAVP--PNGFPTNDVSWYQGNTQNFHQFPAPGIPFQQQLNSVHG 454
           GT  P Q   P  PNGFPTN + WY  N Q   QFP PGIPFQQQL+   G
Sbjct: 395 GTTFPHQQQSPMLPNGFPTNGMPWYPQNPQISPQFPMPGIPFQQQLHPNQG 445



 Score = 93.6 bits (231), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 77/153 (50%), Gaps = 33/153 (21%)

Query: 579 FPFQQQ---------LNPVHGYPNNTQISHQFPVQGTLFQQQSNPVNGFPPATTFPGAQP 629
           FP QQQ          N +  YP N QIS QFP+ G  FQQQ +P  G  P T  PG Q 
Sbjct: 398 FPHQQQSPMLPNGFPTNGMPWYPQNPQISPQFPMPGIPFQQQLHPNQGSLPTTMLPGMQL 457

Query: 630 NMFAQPMYAQRPVNQNQITPGLSTPFPQDQSPI------------------NMHSSFISG 671
           NMFAQ  YA     QNQI  G+ +PFPQ Q PI                  N HS+    
Sbjct: 458 NMFAQSQYAAGLAGQNQIAFGMGSPFPQSQPPIFAAQQGFPSTELCSERNLNFHSN---- 513

Query: 672 NQHAPHQFNPGPSANYRRKKYNRPGKRGWRPGK 704
              AP QF+P P+AN  RK ++  G++GWRP K
Sbjct: 514 --GAPSQFHPRPNANRGRKTFHGAGRKGWRPPK 544