Miyakogusa Predicted Gene

Lj3g3v2718810.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2718810.1 tr|G7IHW5|G7IHW5_MEDTR 23S rRNA
(Uracil-5-)-methyltransferase rumA OS=Medicago truncatula
GN=MTR_2g1,92.11,0,seg,NULL; TRNA (URACIL-5-)-METHYLTRANSFERASE,NULL;
RNA M5U METHYLTRANSFERASE FAMILY,NULL; S-adenosyl,CUFF.44478.1
         (267 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g42890.1                                                       479   e-135
Glyma13g42890.2                                                       415   e-116
Glyma15g02550.1                                                       390   e-109
Glyma11g20660.1                                                        77   2e-14
Glyma12g07300.1                                                        77   3e-14
Glyma12g07300.2                                                        49   4e-06

>Glyma13g42890.1 
          Length = 355

 Score =  479 bits (1233), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/267 (86%), Positives = 244/267 (91%)

Query: 1   MLRSGRDVTTDLPELMVNFVTSSYKPELLKPLVDKVSAFPEVVSIMXXXXXXXXXXXXXE 60
           MLR+GRDVTTD PE+MVNFVTSSYKPELLK LVDKVS FPEVVS++             E
Sbjct: 89  MLRTGRDVTTDQPEVMVNFVTSSYKPELLKFLVDKVSVFPEVVSVINNVNTSVGNTSVGE 148

Query: 61  EEYTLYGKSNITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDLF 120
           EEYTLYGKS+ITETLRGLTFQISANSFFQTNT QAEVLYKLIE+CAGV+GD SEIVLDLF
Sbjct: 149 EEYTLYGKSSITETLRGLTFQISANSFFQTNTYQAEVLYKLIEDCAGVKGDDSEIVLDLF 208

Query: 121 CGTGTIGLTLARSARHVYGYEVVPQAIADARLNAKINGIQNATFVQGDLNKIDENFGRSF 180
           CGTGTIGLTLARS RHVYGYEVVPQAI DARLNAKINGIQNATFVQGDLNKIDENFG++F
Sbjct: 209 CGTGTIGLTLARSVRHVYGYEVVPQAITDARLNAKINGIQNATFVQGDLNKIDENFGKNF 268

Query: 181 PKPDIVISDPNRPGMHMKLIKFLLNLKAPRIVYVSCNPATCARDLDYLCHGVAELNLKGC 240
           PKPDIVISDPNRPGMH+KLIKFLLNL+APRIVYVSCNPATCARDLDYLCHGV E N++GC
Sbjct: 269 PKPDIVISDPNRPGMHIKLIKFLLNLRAPRIVYVSCNPATCARDLDYLCHGVEEKNIEGC 328

Query: 241 YKLLSLQPVDMFPHTPHIECVCLLELS 267
           YKL+SLQPVDMFPHTPHIECVCLLEL 
Sbjct: 329 YKLISLQPVDMFPHTPHIECVCLLELQ 355


>Glyma13g42890.2 
          Length = 328

 Score =  415 bits (1067), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/232 (86%), Positives = 212/232 (91%)

Query: 1   MLRSGRDVTTDLPELMVNFVTSSYKPELLKPLVDKVSAFPEVVSIMXXXXXXXXXXXXXE 60
           MLR+GRDVTTD PE+MVNFVTSSYKPELLK LVDKVS FPEVVS++             E
Sbjct: 89  MLRTGRDVTTDQPEVMVNFVTSSYKPELLKFLVDKVSVFPEVVSVINNVNTSVGNTSVGE 148

Query: 61  EEYTLYGKSNITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDLF 120
           EEYTLYGKS+ITETLRGLTFQISANSFFQTNT QAEVLYKLIE+CAGV+GD SEIVLDLF
Sbjct: 149 EEYTLYGKSSITETLRGLTFQISANSFFQTNTYQAEVLYKLIEDCAGVKGDDSEIVLDLF 208

Query: 121 CGTGTIGLTLARSARHVYGYEVVPQAIADARLNAKINGIQNATFVQGDLNKIDENFGRSF 180
           CGTGTIGLTLARS RHVYGYEVVPQAI DARLNAKINGIQNATFVQGDLNKIDENFG++F
Sbjct: 209 CGTGTIGLTLARSVRHVYGYEVVPQAITDARLNAKINGIQNATFVQGDLNKIDENFGKNF 268

Query: 181 PKPDIVISDPNRPGMHMKLIKFLLNLKAPRIVYVSCNPATCARDLDYLCHGV 232
           PKPDIVISDPNRPGMH+KLIKFLLNL+APRIVYVSCNPATCARDLDYLCHGV
Sbjct: 269 PKPDIVISDPNRPGMHIKLIKFLLNLRAPRIVYVSCNPATCARDLDYLCHGV 320


>Glyma15g02550.1 
          Length = 328

 Score =  390 bits (1002), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/267 (76%), Positives = 213/267 (79%), Gaps = 29/267 (10%)

Query: 1   MLRSGRDVTTDLPELMVNFVTSSYKPELLKPLVDKVSAFPEVVSIMXXXXXXXXXXXXXE 60
           MLR+GRDVTT  PE+MVNFVTSSYKPELLK LVDKVS FPEVVS++             E
Sbjct: 91  MLRTGRDVTTYQPEVMVNFVTSSYKPELLKFLVDKVSVFPEVVSVVNNVNTSVG-----E 145

Query: 61  EEYTLYGKSNITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDLF 120
           EEYTLYGKS+ITETLRG TFQISANSFFQTNT QAEVLYKLIE+CAGVRGDGSEIVLDLF
Sbjct: 146 EEYTLYGKSSITETLRGCTFQISANSFFQTNTYQAEVLYKLIEDCAGVRGDGSEIVLDLF 205

Query: 121 CGTGTIGLTLARSARHVYGYEVVPQAIADARLNAKINGIQNATFVQGDLNKIDENFGRSF 180
           CGTGTIGLTLARS RHVYGYEVVPQAI DA LNAKINGI+                    
Sbjct: 206 CGTGTIGLTLARSDRHVYGYEVVPQAITDAHLNAKINGIKKCNIY--------------- 250

Query: 181 PKPDIVISDPNRPGMHMKLIKFLLNLKAPRIVYVSCNPATCARDLDYLCHGVAELNLKGC 240
                    PNRPGMHMKLIKFLLNL+APRIVYVSCNPATCARDLDYLCHGV E N+KGC
Sbjct: 251 ---------PNRPGMHMKLIKFLLNLRAPRIVYVSCNPATCARDLDYLCHGVVEQNIKGC 301

Query: 241 YKLLSLQPVDMFPHTPHIECVCLLELS 267
           YKL+SLQPVDMFPHTPHIECVCLLEL 
Sbjct: 302 YKLISLQPVDMFPHTPHIECVCLLELQ 328


>Glyma11g20660.1 
          Length = 755

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 71  ITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDLFCGTGTIGLTL 130
           I + +  L F IS  +FFQ NT  AE LY L  + A +  D   ++ D+ CGTGTIGLTL
Sbjct: 393 IHDYVNNLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGPD--TLLFDICCGTGTIGLTL 450

Query: 131 ARSARHVYGYEVVPQAIADARLNAKINGIQNATFV 165
           A     V G E+   A++DA  NA+INGI+N  F+
Sbjct: 451 AHRVGMVIGIEMNASAVSDAHRNAEINGIKNIKFI 485



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 28/109 (25%)

Query: 185 IVISDPNRPGMHMKLIKFLLNLKA-PRIVYVSCNPATCARDLDYLC-------------- 229
           + I DP R G+H  +IK L       R+VY+SCNP T   +   LC              
Sbjct: 646 VAIVDPPRAGLHPTVIKALRTHPGLRRLVYISCNPETLVANAIELCTPSPLKIEKGNKDN 705

Query: 230 -------------HGVAELNLKGCYKLLSLQPVDMFPHTPHIECVCLLE 265
                        H    + +   +  +    VD+FPHTPH E V LLE
Sbjct: 706 RGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLE 754


>Glyma12g07300.1 
          Length = 778

 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 71  ITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDLFCGTGTIGLTL 130
           I + +  L F IS  +FFQ NT  AE LY L  + + +  D   ++ D+ CGTGTIGLTL
Sbjct: 491 IHDHINNLQFSISPTAFFQVNTLAAEKLYSLAGDWSCLGPD--TLLFDICCGTGTIGLTL 548

Query: 131 ARSARHVYGYEVVPQAIADARLNAKINGIQNATFV 165
           A     V G E+   A++DA  NA+INGI+N  F+
Sbjct: 549 AHRVGMVIGIEMNASAVSDAHRNAEINGIKNVKFI 583


>Glyma12g07300.2 
          Length = 300

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 28/109 (25%)

Query: 185 IVISDPNRPGMHMKLIKFLLNLKA-PRIVYVSCNPATCARDLDYLC-------------- 229
           + I DP R G+H  +IK L       R+VY+SCNP T   +   LC              
Sbjct: 191 VAIVDPPRAGLHPTVIKALRTHPGLRRLVYISCNPETLVANAIELCTPSPVKIEKGNKDN 250

Query: 230 -------------HGVAELNLKGCYKLLSLQPVDMFPHTPHIECVCLLE 265
                        H    + +   +  +    VD+FPHTPH E V LLE
Sbjct: 251 RGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLE 299