Miyakogusa Predicted Gene

Lj3g3v2658840.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2658840.3 tr|A9S0G0|A9S0G0_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,43.52,2e-18, ,CUFF.44338.3
         (107 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g00670.1                                                       187   3e-48
Glyma07g04030.1                                                       173   4e-44

>Glyma16g00670.1 
          Length = 312

 Score =  187 bits (474), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/107 (86%), Positives = 98/107 (91%)

Query: 1   MGQMVILQLIVKKARIKTLVKDKRVALEAFGNYVESMAGDTKDNRFLKKALRGVRTIICP 60
           MGQMVIL LIVKKAR+KTLVKDKRVALEAFG+YVESMAGDT D RF+KKALRGVRTIICP
Sbjct: 114 MGQMVILSLIVKKARVKTLVKDKRVALEAFGSYVESMAGDTSDKRFVKKALRGVRTIICP 173

Query: 61  NEGFPSSVGSLQGVQHVIFLSQLSVYSGKSGIQSMMKSNAGKLAGQD 107
           NEGF SSVGSLQGVQHVI LS+LSVY G+SG QSMMKSNA KLA QD
Sbjct: 174 NEGFLSSVGSLQGVQHVIVLSRLSVYGGQSGFQSMMKSNAKKLAEQD 220


>Glyma07g04030.1 
          Length = 331

 Score =  173 bits (439), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 95/125 (76%), Positives = 97/125 (77%), Gaps = 19/125 (15%)

Query: 2   GQMVILQLIVKKARIKTLVKDKRVALEAFGNYVE-----------------SMAGDTKDN 44
           GQMVIL LIVKKAR+KTLVKDKRVALEAFG+YVE                 SMAGDT D 
Sbjct: 115 GQMVILSLIVKKARVKTLVKDKRVALEAFGSYVEFCLFFSLIIDHMMLVAKSMAGDTSDK 174

Query: 45  RFLKKALRGVRTIICPNEGFPSSVGSLQGVQHVIFLS--QLSVYSGKSGIQSMMKSNAGK 102
           RFLKKALRGVRTIICPNEGF SSVGSLQGVQHVI LS  QLSVY GKSG QSMMKSNA K
Sbjct: 175 RFLKKALRGVRTIICPNEGFLSSVGSLQGVQHVIVLSQLQLSVYGGKSGFQSMMKSNAKK 234

Query: 103 LAGQD 107
           LA QD
Sbjct: 235 LAEQD 239