Miyakogusa Predicted Gene

Lj3g3v2576580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2576580.1 Non Chatacterized Hit- tr|C6SZ12|C6SZ12_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56808 PE,95.31,0,snRNP
Sm proteins,Ribonucleoprotein LSM domain, eukaryotic/archaea-type;
LSM,Ribonucleoprotein LSM d,CUFF.44265.1
         (128 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g04580.1                                                       251   1e-67
Glyma16g01160.1                                                       208   1e-54
Glyma15g40590.2                                                        60   6e-10
Glyma15g40590.1                                                        60   6e-10
Glyma08g18410.1                                                        60   6e-10
Glyma08g18410.2                                                        53   8e-08
Glyma11g09150.1                                                        53   9e-08
Glyma19g38130.1                                                        53   9e-08
Glyma03g35490.1                                                        53   9e-08

>Glyma07g04580.1 
          Length = 128

 Score =  251 bits (642), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 124/128 (96%), Positives = 125/128 (97%)

Query: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60
           MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60

Query: 61  YCDIPLGLYVIRGENVVLIGELDLEREELPPHMVRVSTAEIKRAQKAERDASDLKGTMRK 120
           YCDIPLGLYVIRGENVVLIGELDLEREELP HM RVSTAEIKRAQKAER+ASDLKGTMRK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRAQKAEREASDLKGTMRK 120

Query: 121 RMEFLDLD 128
           RMEFLD D
Sbjct: 121 RMEFLDFD 128


>Glyma16g01160.1 
          Length = 110

 Score =  208 bits (529), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/108 (95%), Positives = 105/108 (97%)

Query: 21  KKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIG 80
           +KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIG
Sbjct: 3   EKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIG 62

Query: 81  ELDLEREELPPHMVRVSTAEIKRAQKAERDASDLKGTMRKRMEFLDLD 128
           ELDLEREELP HM RVSTAEIKRAQKAER+ASDLKGTMRKRMEFLD D
Sbjct: 63  ELDLEREELPEHMTRVSTAEIKRAQKAEREASDLKGTMRKRMEFLDFD 110


>Glyma15g40590.2 
          Length = 98

 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 8/83 (9%)

Query: 4  AGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGDLYC 62
          AGP        L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    +   
Sbjct: 3  AGP-------GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQ 55

Query: 63 DIPLGLYVIRGENVVLIGELDLE 85
           + LGLY+IRG+N+ ++GELD E
Sbjct: 56 QLVLGLYIIRGDNISVVGELDEE 78


>Glyma15g40590.1 
          Length = 98

 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 8/83 (9%)

Query: 4  AGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGDLYC 62
          AGP        L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    +   
Sbjct: 3  AGP-------GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQ 55

Query: 63 DIPLGLYVIRGENVVLIGELDLE 85
           + LGLY+IRG+N+ ++GELD E
Sbjct: 56 QLVLGLYIIRGDNISVVGELDEE 78


>Glyma08g18410.1 
          Length = 98

 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 8/83 (9%)

Query: 4  AGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGDLYC 62
          AGP        L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    +   
Sbjct: 3  AGP-------GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQ 55

Query: 63 DIPLGLYVIRGENVVLIGELDLE 85
           + LGLY+IRG+N+ ++GELD E
Sbjct: 56 QLVLGLYIIRGDNISVVGELDEE 78


>Glyma08g18410.2 
          Length = 94

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 25 VLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGDLYCDIPLGLYVIRGENVVLIGELD 83
          ++  DGR ++G L+ FDQ  N +L+ + ERV    +    + LGLY+IRG+N+ ++GELD
Sbjct: 13 LITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELD 72

Query: 84 LE 85
           E
Sbjct: 73 EE 74


>Glyma11g09150.1 
          Length = 79

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 11/84 (13%)

Query: 1  MSWAG-PEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGD 59
          MS +G P D      L  Y+DKKL + L   R ++GTLR FDQF N V++   E  + G+
Sbjct: 1  MSRSGQPPD------LKKYMDKKLQIKLNGNRMIVGTLRGFDQFMNLVVDNTVE--VNGN 52

Query: 60 LYCDIPLGLYVIRGENVVLIGELD 83
             DI  G+ VIRG +VV +  L+
Sbjct: 53 EKNDI--GMVVIRGNSVVTVEALE 74


>Glyma19g38130.1 
          Length = 79

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 11/84 (13%)

Query: 1  MSWAG-PEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGD 59
          MS +G P D      L  Y+DKKL + L   R ++GTLR FDQF N V++   E  + G+
Sbjct: 1  MSRSGQPPD------LKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE--VNGN 52

Query: 60 LYCDIPLGLYVIRGENVVLIGELD 83
             DI  G+ VIRG +VV +  L+
Sbjct: 53 EKNDI--GMVVIRGNSVVTVEALE 74


>Glyma03g35490.1 
          Length = 79

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 11/84 (13%)

Query: 1  MSWAG-PEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGD 59
          MS +G P D      L  Y+DKKL + L   R ++GTLR FDQF N V++   E  + G+
Sbjct: 1  MSRSGQPPD------LKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE--VNGN 52

Query: 60 LYCDIPLGLYVIRGENVVLIGELD 83
             DI  G+ VIRG +VV +  L+
Sbjct: 53 EKNDI--GMVVIRGNSVVTVEALE 74