Miyakogusa Predicted Gene

Lj3g3v2320530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2320530.1 Non Chatacterized Hit- tr|I1KUZ9|I1KUZ9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.3148
PE=,89.82,0,seg,NULL; Med6,Mediator complex, subunit Med6;
MED-6-RELATED,Mediator complex, subunit Med6,CUFF.43930.1
         (244 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g21290.1                                                       396   e-111
Glyma08g21290.2                                                       389   e-108
Glyma07g01650.1                                                       104   8e-23

>Glyma08g21290.1 
          Length = 252

 Score =  396 bits (1018), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/226 (83%), Positives = 201/226 (88%)

Query: 19  TDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSLHPLDLSQLTKMT 78
           TDMTGICFRDQLWLN++PLDRNLVFDYFALSPFYDWTCNNEQLRMRS+HPLD+SQL+KMT
Sbjct: 22  TDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDISQLSKMT 81

Query: 79  GTEFVLSEVMEPHLFLIRKQKRDSPDKVTPMLAYYILDGSIYQAPQLCNVFAARIGRALY 138
           GTE++LSEVMEPHLF+IRKQKRDSPDKVTPMLAYY+LDGSIYQAPQLCNVFAARIGRALY
Sbjct: 82  GTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALY 141

Query: 139 YIEKAFTTAASKLEKIGYAGPVDSETETASLESKVAKETIDLKEVKRVDHILASLQRKLX 198
           YI+KAFTTAASKLEKIGYAG  DSE ETA LESK AKETID+KEVKRVDHILASLQRKL 
Sbjct: 142 YIQKAFTTAASKLEKIGYAGSADSENETALLESKTAKETIDIKEVKRVDHILASLQRKLP 201

Query: 199 XXXXXXXXXXXXXXXSTAETEKGTETQESAEPQAPQVDPIIDQGPA 244
                           TAETEKGTETQE+AE QAP  DPIIDQGPA
Sbjct: 202 PAPPPPPFPEGYVPPPTAETEKGTETQEAAETQAPTADPIIDQGPA 247


>Glyma08g21290.2 
          Length = 249

 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/226 (83%), Positives = 200/226 (88%), Gaps = 3/226 (1%)

Query: 19  TDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSLHPLDLSQLTKMT 78
           TDMTGICFRDQLWLN++PLDRNLVFDYFALSPFYDWTCNNEQLRMRS+HPLD+SQL+KMT
Sbjct: 22  TDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDISQLSKMT 81

Query: 79  GTEFVLSEVMEPHLFLIRKQKRDSPDKVTPMLAYYILDGSIYQAPQLCNVFAARIGRALY 138
           GTE++LSEVMEPHLF+IRKQKRDSPDKVTPMLAYY+LDGSIYQAPQLCNVFAARIGRALY
Sbjct: 82  GTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALY 141

Query: 139 YIEKAFTTAASKLEKIGYAGPVDSETETASLESKVAKETIDLKEVKRVDHILASLQRKLX 198
           YI+KAFTTAASKLEKIGYA   DSE ETA LESK AKETID+KEVKRVDHILASLQRKL 
Sbjct: 142 YIQKAFTTAASKLEKIGYA---DSENETALLESKTAKETIDIKEVKRVDHILASLQRKLP 198

Query: 199 XXXXXXXXXXXXXXXSTAETEKGTETQESAEPQAPQVDPIIDQGPA 244
                           TAETEKGTETQE+AE QAP  DPIIDQGPA
Sbjct: 199 PAPPPPPFPEGYVPPPTAETEKGTETQEAAETQAPTADPIIDQGPA 244


>Glyma07g01650.1 
          Length = 92

 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 60/87 (68%)

Query: 158 GPVDSETETASLESKVAKETIDLKEVKRVDHILASLQRKLXXXXXXXXXXXXXXXXSTAE 217
           G VDSE  TA LESK AKETID+KE KRVDHIL SLQR+L                 TAE
Sbjct: 1   GSVDSENGTALLESKTAKETIDIKEAKRVDHILTSLQRRLPPAPPPPPFPEGYVSPLTAE 60

Query: 218 TEKGTETQESAEPQAPQVDPIIDQGPA 244
           TEKGTETQE+AE QAP  DPIIDQGPA
Sbjct: 61  TEKGTETQEAAETQAPTADPIIDQGPA 87