Miyakogusa Predicted Gene

Lj3g3v2317800.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2317800.1 tr|Q108V0|Q108V0_ORYSJ Expressed protein
(Fragment) OS=Oryza sativa subsp. japonica
GN=LOC_Os10g4307,50.74,0.000000000000003,coiled-coil,NULL;
seg,NULL,CUFF.43831.1
         (328 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g24170.1                                                       382   e-106
Glyma03g24170.2                                                       340   1e-93
Glyma07g12530.1                                                       211   8e-55

>Glyma03g24170.1 
          Length = 1732

 Score =  382 bits (981), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/293 (67%), Positives = 217/293 (74%), Gaps = 3/293 (1%)

Query: 2    RESILQVLGDLTAVHSYFDVFSEKINQXXXXXXXXXXXLDIIQKEHALPGRMEDSKGWNQ 61
            RES++QVLG+LTAVHSYFD+F+ KI+Q           LDIIQKEHALPGRM+DSK WNQ
Sbjct: 1404 RESVVQVLGNLTAVHSYFDLFTRKIDQDDMELEEAELELDIIQKEHALPGRMDDSKDWNQ 1463

Query: 62   TPTLPSYGKDLSRLQQIRECIRSLEKTKLKEDILGRRQKKILLRHTHQKHXXXXXXXXXX 121
             P LPSY KD+SRLQQIRECIRSLEK+KLKEDI+ RRQKK+L+RH  QKH          
Sbjct: 1464 IPGLPSYRKDVSRLQQIRECIRSLEKSKLKEDIIARRQKKLLMRHARQKHLEEATLREAD 1523

Query: 122  XXXXXDRERVAXXXXXXXXXXXXXXXXAKTRELRHNLDMEKERQTQKELQREIEQAESGL 181
                 DRER A                AKT+ELRHNLDMEKERQTQ+ELQREIEQAESGL
Sbjct: 1524 LLQELDRERTAEMEKELERQRLLEIERAKTKELRHNLDMEKERQTQRELQREIEQAESGL 1583

Query: 182  RPSRRDFPSSTHTNRPRDRFRDRENGRSVNDGSARAGTGSLQXXXXXXXXXXXXXXXXVL 241
            RPSRRDFPSS+   RPRDRFR+RENGRS N+GS RAG+GSLQ                VL
Sbjct: 1584 RPSRRDFPSSS---RPRDRFRERENGRSGNEGSTRAGSGSLQSEIPSTSSSMAPLPTIVL 1640

Query: 242  SGSRTFSGQVPTILQSRDRQDDSGSMYEENVDGSKDSGDASSIGDPELASAFD 294
            SGSRT SGQ+PTILQSRDRQDD+GSMYEENVDGSKDSGD  SIGDPEL SAFD
Sbjct: 1641 SGSRTLSGQLPTILQSRDRQDDTGSMYEENVDGSKDSGDTGSIGDPELVSAFD 1693


>Glyma03g24170.2 
          Length = 300

 Score =  340 bits (873), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/254 (69%), Positives = 190/254 (74%), Gaps = 3/254 (1%)

Query: 41  DIIQKEHALPGRMEDSKGWNQTPTLPSYGKDLSRLQQIRECIRSLEKTKLKEDILGRRQK 100
           DIIQKEHALPGRM+DSK WNQ P LPSY KD+SRLQQIRECIRSLEK+KLKEDI+ RRQK
Sbjct: 11  DIIQKEHALPGRMDDSKDWNQIPGLPSYRKDVSRLQQIRECIRSLEKSKLKEDIIARRQK 70

Query: 101 KILLRHTHQKHXXXXXXXXXXXXXXXDRERVAXXXXXXXXXXXXXXXXAKTRELRHNLDM 160
           K+L+RH  QKH               DRER A                AKT+ELRHNLDM
Sbjct: 71  KLLMRHARQKHLEEATLREADLLQELDRERTAEMEKELERQRLLEIERAKTKELRHNLDM 130

Query: 161 EKERQTQKELQREIEQAESGLRPSRRDFPSSTHTNRPRDRFRDRENGRSVNDGSARAGTG 220
           EKERQTQ+ELQREIEQAESGLRPSRRDFPSS+   RPRDRFR+RENGRS N+GS RAG+G
Sbjct: 131 EKERQTQRELQREIEQAESGLRPSRRDFPSSS---RPRDRFRERENGRSGNEGSTRAGSG 187

Query: 221 SLQXXXXXXXXXXXXXXXXVLSGSRTFSGQVPTILQSRDRQDDSGSMYEENVDGSKDSGD 280
           SLQ                VLSGSRT SGQ+PTILQSRDRQDD+GSMYEENVDGSKDSGD
Sbjct: 188 SLQSEIPSTSSSMAPLPTIVLSGSRTLSGQLPTILQSRDRQDDTGSMYEENVDGSKDSGD 247

Query: 281 ASSIGDPELASAFD 294
             SIGDPEL SAFD
Sbjct: 248 TGSIGDPELVSAFD 261


>Glyma07g12530.1 
          Length = 164

 Score =  211 bits (537), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 107/154 (69%), Positives = 114/154 (74%)

Query: 41  DIIQKEHALPGRMEDSKGWNQTPTLPSYGKDLSRLQQIRECIRSLEKTKLKEDILGRRQK 100
           DIIQKEHAL GRMEDSK WNQ P LPSY KD+SRLQQIRECIRSLEK+KLKEDI+ RRQK
Sbjct: 10  DIIQKEHALQGRMEDSKDWNQIPGLPSYKKDVSRLQQIRECIRSLEKSKLKEDIIARRQK 69

Query: 101 KILLRHTHQKHXXXXXXXXXXXXXXXDRERVAXXXXXXXXXXXXXXXXAKTRELRHNLDM 160
           K+L+RH  QKH               DRER A                AKT+ELRHNLDM
Sbjct: 70  KLLMRHARQKHLEEASLREADLLQELDRERTAEMEKELERQRLLEIERAKTKELRHNLDM 129

Query: 161 EKERQTQKELQREIEQAESGLRPSRRDFPSSTHT 194
           EKERQTQ+ELQREIEQAESGLRPSRRDFPSSTHT
Sbjct: 130 EKERQTQRELQREIEQAESGLRPSRRDFPSSTHT 163