Miyakogusa Predicted Gene

Lj3g3v2246970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2246970.1 tr|D7M9Q0|D7M9Q0_ARALL RNA recognition
motif-containing protein OS=Arabidopsis lyrata subsp. lyrata
,65.52,0.000000000000001,RRM_3,RNA-binding motif; RNA-BINDING
PROTEIN-RELATED,NULL; LUPUS LA PROTEIN-RELATED,NULL; no
descrip,NODE_105060_length_252_cov_24.654762.path3.1
         (63 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g08650.1                                                        77   4e-15
Glyma04g08540.1                                                        77   4e-15
Glyma17g25990.1                                                        71   3e-13
Glyma14g21540.1                                                        65   2e-11
Glyma15g36730.1                                                        63   7e-11

>Glyma06g08650.1 
          Length = 460

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 52/58 (89%)

Query: 5   IDFTMRAESGFIRFEESEAAQKSRAAAVLSKNGGLVVKNYIAMLDPVTGEAEKEYCRI 62
           IDF + AESG+IRFEE+EAAQK+RAAAV+S+  GLVVKNYIA+LDPVTGEAEKEY  +
Sbjct: 355 IDFKIGAESGYIRFEETEAAQKARAAAVISEKDGLVVKNYIAILDPVTGEAEKEYWNL 412


>Glyma04g08540.1 
          Length = 488

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 52/58 (89%)

Query: 5   IDFTMRAESGFIRFEESEAAQKSRAAAVLSKNGGLVVKNYIAMLDPVTGEAEKEYCRI 62
           IDF + AESG+IRFEE+EAAQK+RAAAV+S+  GLVVKNYIA+LDPVTGEAEKEY  +
Sbjct: 383 IDFKIGAESGYIRFEETEAAQKARAAAVISEKDGLVVKNYIAILDPVTGEAEKEYWSL 440


>Glyma17g25990.1 
          Length = 406

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 49/58 (84%)

Query: 5   IDFTMRAESGFIRFEESEAAQKSRAAAVLSKNGGLVVKNYIAMLDPVTGEAEKEYCRI 62
           IDF +  ESG+I+FEE EAAQK+RAAAVLS+  GLVVKNYIA LDPVTGEAE+EY  +
Sbjct: 322 IDFKIGEESGYIQFEEPEAAQKARAAAVLSEKEGLVVKNYIATLDPVTGEAEREYWTL 379


>Glyma14g21540.1 
          Length = 366

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/55 (74%), Positives = 47/55 (85%)

Query: 5   IDFTMRAESGFIRFEESEAAQKSRAAAVLSKNGGLVVKNYIAMLDPVTGEAEKEY 59
           IDF +  +SG+I FEE EAAQK+RAAAVLS+  GLVVKNYIA LDPVTGEAE+EY
Sbjct: 262 IDFKIGEKSGYIWFEEPEAAQKARAAAVLSEKEGLVVKNYIATLDPVTGEAEREY 316


>Glyma15g36730.1 
          Length = 42

 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 36/40 (90%)

Query: 12 ESGFIRFEESEAAQKSRAAAVLSKNGGLVVKNYIAMLDPV 51
          +SG+IRFEE E+AQK+RA AV+S+  GL+VKNYIA++DPV
Sbjct: 1  QSGYIRFEEIESAQKARATAVISEKDGLIVKNYIAIIDPV 40