Miyakogusa Predicted Gene

Lj3g3v2200270.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2200270.1 tr|G7IWQ9|G7IWQ9_MEDTR F-box protein SKIP23
OS=Medicago truncatula GN=MTR_3g030380 PE=4 SV=1,37.3,3e-19,seg,NULL;
DUF295,Protein of unknown function DUF295,CUFF.43662.1
         (171 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g11470.1                                                       133   8e-32
Glyma02g04930.1                                                        67   1e-11
Glyma16g22900.1                                                        60   1e-09
Glyma09g19520.1                                                        51   6e-07

>Glyma10g11470.1 
          Length = 368

 Score =  133 bits (335), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 99/188 (52%), Gaps = 25/188 (13%)

Query: 2   PYDDVCVF---------NGRPCP------SIDVIAEPVFGGDEKFLVESEGRLFLVDKHL 46
           PYDDVCVF         NGR          + + AEPVFGGD+KFLVESEG L LVD +L
Sbjct: 184 PYDDVCVFKGNLYGADSNGRTVRVRPDDGGLTLAAEPVFGGDKKFLVESEGALLLVDMYL 243

Query: 47  SSTCHENXXXXXXXXXXXXXXXXLKKPVKFDVYRLDENEKMWVEVESLGDRVLFLGDVCA 106
           S                       ++ VKFDV+RLDE  K WVE+  LG+RVLFLGD CA
Sbjct: 244 SYYSCTQGLFHEDFDEEDVAGMGWERTVKFDVFRLDEEGKKWVELTDLGERVLFLGDDCA 303

Query: 107 FSASASDLGVGRGNCVIFED----YKLKKNGVGIFPLDVGWXXXXXXXXXXXXXXXXXRL 162
           FSASA DL +GRGNCV F D    +    NG+G+F LD G                   L
Sbjct: 304 FSASAKDLNLGRGNCVAFRDDGLGFNRVLNGMGVFRLDDG------KISPLSECAGFSEL 357

Query: 163 LKPPPDWV 170
             PPPDWV
Sbjct: 358 FCPPPDWV 365


>Glyma02g04930.1 
          Length = 379

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 22/140 (15%)

Query: 3   YDDVCVFNGR-------------PCPSIDVI--AEPVFG-GDEKFLVESEGRLFLVDKHL 46
           YDDV VF G+                S+ ++  + P+ G GD+K LVES G L++VD++ 
Sbjct: 207 YDDVIVFKGQFYVTDDRGTISWIDTSSLKLVQFSPPLCGLGDKKHLVESCGSLYVVDRYY 266

Query: 47  SSTCHENXXXXXXXXXXXXXXXXLKKPVKFDVYRLDENEKMWVEVESLGDRVLFLGDVCA 106
            S                     +   V F VY+LDE    WV+V++LGDR   LG+ C+
Sbjct: 267 ESETSRRRNYVGGREDR------VAAVVCFKVYKLDEEWGKWVDVKNLGDRAFVLGNSCS 320

Query: 107 FSASASDLGVGRGNCVIFED 126
           FS SA +L   + NC+ F D
Sbjct: 321 FSVSAKELTGYQENCIYFTD 340


>Glyma16g22900.1 
          Length = 361

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 20  IAEPVFGGDEKFLVESEGRLFLVDKHLSSTCHENXXXXXXXXXXXXXXXXLKKPVKFDVY 79
           + +PVF      LVES G L++VD++  S                           F VY
Sbjct: 172 VTQPVFFSH---LVESCGSLYVVDRYYGSEPPRRRNYLGRADREAAVEY-------FKVY 221

Query: 80  RLDENEKMWVEVESLGDRVLFLGDVCAFSASASDLGVGRGNCVIFED 126
           +LDE    WV+V+ LGDR   LG+ C+FS SA +L   +GNC+ F D
Sbjct: 222 KLDEEWGTWVDVKHLGDRAFVLGNCCSFSVSAKELMGYQGNCIYFMD 268


>Glyma09g19520.1 
          Length = 471

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 17/95 (17%)

Query: 30  KFLVESEGRLFLVDKHLSSTCHENXXXXXXXXXXXXXXXXLKKPVKFDVYRLDENEKMWV 89
           ++LVES G L LV ++ S+                     + + +KF+VY LD  +  W 
Sbjct: 316 RYLVESCGELLLVCRYFSTK-----------------QDAVLETLKFEVYSLDFCQLSWK 358

Query: 90  EVESLGDRVLFLGDVCAFSASASDLGVGRGNCVIF 124
           +VE LGD+++FLG   + S SA +LG G  N + F
Sbjct: 359 KVEDLGDQMIFLGKCSSTSFSAMELGAGIRNSIFF 393