Miyakogusa Predicted Gene

Lj3g3v2074860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2074860.1 tr|B9HZ13|B9HZ13_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_567987 PE=4
SV=1,25.74,0.00000000000008,seg,NULL; F-box domain,F-box domain,
cyclin-like; no description,NULL; FAMILY NOT NAMED,NULL;
F-box,,CUFF.43551.1
         (379 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g02510.1                                                       219   5e-57
Glyma09g08890.1                                                        55   1e-07

>Glyma07g02510.1 
          Length = 316

 Score =  219 bits (557), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 173/366 (47%), Gaps = 63/366 (17%)

Query: 11  LSNINHFSDDLLVEIFIRLPFRSIAGCKCTSKRWLDLISSPIFIQQFITRQNNLFNAFLI 70
           +S+IN+ SDD++ EIFIRLPFRS   CKC  KRWL LISSP F  +F++ Q +LF A+  
Sbjct: 1   MSSINNLSDDVMGEIFIRLPFRSTVKCKCVCKRWLGLISSPSFPTEFVSSQYSLFKAYFT 60

Query: 71  FLTPHELMLGFI-TXXXXXXXXXXXXXXXXXXVKXXXXXXXXXXXXXXXTRYTTGNGYSI 129
           FL+PH+LM GF  +                  +K                R+T G GY +
Sbjct: 61  FLSPHQLMFGFFPSDLNFNAQIHKVPLSPAILIKGDVCGYSNGLFLCCSNRFTRGWGYFV 120

Query: 130 YNPLTKQCTQIAPSPANQIGNLYAVGFVCDPFFGLSREVVAAAAESLVQVQRDXXXXXXX 189
           Y+P TK+C  I                   PF    +E    A   L Q+          
Sbjct: 121 YDPFTKECNHIP------------------PFPDAHKETCLYAVGFLSQIND-------- 154

Query: 190 XXXXXXXXXXXXXXXXXXXTGTWEQTVVTCPDGFAFAPHWLLSVEYEGFLYFMGRTSIFV 249
                                  E  +      FAF          EG+L+FMG  SI V
Sbjct: 155 ------FEEEGNSNRCFWVVVNMETNIDELCGCFAF----------EGYLHFMGSRSILV 198

Query: 250 FDPYSKESDVLDYPDDADSMNIMSFGFLGTCCGRLRIADIGLNYLTVWELIENDYWDLVH 309
            DP       +DYP++AD+MNIMSFG+LG   G +RIADIG N L VWEL+    W L  
Sbjct: 199 LDPIFMICTTIDYPENADAMNIMSFGYLGCSGGTMRIADIGNNDLRVWELLIPGKWHL-- 256

Query: 310 TTNLSTKLPDKFCNNYYKRVAGFHPYDGDIVYLHSYADGVFVANLGTDEFEAIPGYEKSD 369
                             RV GFHPYDGDIVYLHSY DG++  NLGT++   I GY+K D
Sbjct: 257 ------------------RVGGFHPYDGDIVYLHSYVDGIYAINLGTNKVVPISGYDKFD 298

Query: 370 ISPFQL 375
           ISPFQL
Sbjct: 299 ISPFQL 304


>Glyma09g08890.1 
          Length = 240

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 10/85 (11%)

Query: 209 TGTWEQTVVTCPDGFAFAPHWLL---SVEYEGFLYFMGRTSIFVFDPYSKE--SDVLDYP 263
           TG W+  +V+CP GFA    + L   SVE+EG LYFMG   + V+DPY  E  + V++ P
Sbjct: 118 TGKWKNFLVSCPKGFACG--FFLTASSVEHEGKLYFMGGGRVLVYDPYENERVASVIELP 175

Query: 264 DDADSMNIMSFGFLGTCCGRLRIAD 288
                      G LG  CG L++++
Sbjct: 176 ---RGFGEAYRGCLGVSCGTLQLSE 197