Miyakogusa Predicted Gene

Lj3g3v2042220.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2042220.4 Non Chatacterized Hit- tr|D8TQL3|D8TQL3_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,45.83,3e-18,RRM_1,RNA recognition motif domain; RNA-BINDING
PROTEIN,NULL; seg,NULL; RNA recognition motif,RNA re,CUFF.43498.4
         (224 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g23850.1                                                       241   4e-64
Glyma07g00560.2                                                       223   2e-58
Glyma07g00560.1                                                       221   3e-58
Glyma07g01330.1                                                        54   1e-07
Glyma07g01330.2                                                        54   1e-07
Glyma08g20730.2                                                        52   4e-07
Glyma08g20730.1                                                        52   4e-07
Glyma01g39560.1                                                        51   1e-06
Glyma11g05690.1                                                        50   2e-06
Glyma11g05690.2                                                        50   3e-06

>Glyma08g23850.1 
          Length = 355

 Score =  241 bits (615), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 128/203 (63%), Positives = 134/203 (66%), Gaps = 1/203 (0%)

Query: 1   MGFALFSSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFIKRGIGADAAAFDQSKRL 60
           MGFALFS+PHQA+ AKDILQDMLFDP+ KSVLHTEMAKKNLF+KRGIGADA AFDQSKRL
Sbjct: 79  MGFALFSAPHQALTAKDILQDMLFDPDTKSVLHTEMAKKNLFVKRGIGADAGAFDQSKRL 138

Query: 61  RTAGDYTHTGYVTXXXXXXXXXXXXXXHGYMXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RTAGDYTHTGY +              HGYM                             
Sbjct: 139 RTAGDYTHTGYTSPSPFHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAPVPMPTPAPIAA 198

Query: 121 XXX-XXXQNTKDNPPCNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVCFIE 179
                  QNTKDNPPCNTLF            V+GLFSVQPGFKQMKILRQERHTVCFIE
Sbjct: 199 PSTYVPVQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKILRQERHTVCFIE 258

Query: 180 FEDVNSAANVHHTLQGAVIPSSG 202
           FEDVNSA NVHH LQGAVIPSS 
Sbjct: 259 FEDVNSATNVHHNLQGAVIPSSA 281


>Glyma07g00560.2 
          Length = 324

 Score =  223 bits (567), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 124/206 (60%), Positives = 131/206 (63%), Gaps = 4/206 (1%)

Query: 1   MGFALFSSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFIKR--GIGADAAAFDQSK 58
           MGFALFS+PHQA+AAKDILQDMLFDP+ KSVLHTEMAKKNLF+KR  G      AFDQSK
Sbjct: 78  MGFALFSAPHQALAAKDILQDMLFDPDTKSVLHTEMAKKNLFVKRGIGAADAGGAFDQSK 137

Query: 59  RLRTAGDYTHTGYVTXXXXXXXXXXXXXXHGYMXXXXXXXXXXXXXXXXXXXXXXXXXXX 118
           RLRTAGDYTH+GY +              HGYM                           
Sbjct: 138 RLRTAGDYTHSGYTSPSPFHPPPPPVWGPHGYMAPPPPPPPYDPYAGYPVAPVPMPTPAP 197

Query: 119 XXXXXX--XXQNTKDNPPCNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVC 176
                     QNTKDNPPCNTLF            V+GLFSVQPGFKQMKILRQERHTVC
Sbjct: 198 IPAPSTYVPVQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKILRQERHTVC 257

Query: 177 FIEFEDVNSAANVHHTLQGAVIPSSG 202
           FIEFEDVNSA NVHH LQGAVIPSSG
Sbjct: 258 FIEFEDVNSATNVHHNLQGAVIPSSG 283


>Glyma07g00560.1 
          Length = 328

 Score =  221 bits (564), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 123/210 (58%), Positives = 130/210 (61%), Gaps = 8/210 (3%)

Query: 1   MGFALFSSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFIKRGI------GADAAAF 54
           MGFALFS+PHQA+AAKDILQDMLFDP+ KSVLHTEMAKKNLF+KR             AF
Sbjct: 78  MGFALFSAPHQALAAKDILQDMLFDPDTKSVLHTEMAKKNLFVKRACLVGIGAADAGGAF 137

Query: 55  DQSKRLRTAGDYTHTGYVTXXXXXXXXXXXXXXHGYMXXXXXXXXXXXXXXXXXXXXXXX 114
           DQSKRLRTAGDYTH+GY +              HGYM                       
Sbjct: 138 DQSKRLRTAGDYTHSGYTSPSPFHPPPPPVWGPHGYMAPPPPPPPYDPYAGYPVAPVPMP 197

Query: 115 XXXXXXXXXX--XXQNTKDNPPCNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQER 172
                         QNTKDNPPCNTLF            V+GLFSVQPGFKQMKILRQER
Sbjct: 198 TPAPIPAPSTYVPVQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKILRQER 257

Query: 173 HTVCFIEFEDVNSAANVHHTLQGAVIPSSG 202
           HTVCFIEFEDVNSA NVHH LQGAVIPSSG
Sbjct: 258 HTVCFIEFEDVNSATNVHHNLQGAVIPSSG 287


>Glyma07g01330.1 
          Length = 265

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%)

Query: 135 CNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVCFIEFEDVNSAANVHHTLQ 194
           C+TLF            +K  FSV  GF  +K+  +    V F++FE+ + AA V   LQ
Sbjct: 182 CSTLFIANLGPNCTEDELKQAFSVYTGFNMVKMRSRGGMPVAFVDFEETDQAAKVVEELQ 241

Query: 195 GAVIPSSGSVGMRIQYPFLYFKK 217
           G+++PSS   GM I+Y     +K
Sbjct: 242 GSLLPSSDRGGMHIEYARSKMRK 264


>Glyma07g01330.2 
          Length = 261

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%)

Query: 135 CNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVCFIEFEDVNSAANVHHTLQ 194
           C+TLF            +K  FSV  GF  +K+  +    V F++FE+ + AA V   LQ
Sbjct: 182 CSTLFIANLGPNCTEDELKQAFSVYTGFNMVKMRSRGGMPVAFVDFEETDQAAKVVEELQ 241

Query: 195 GAVIPSSGSVGMRIQY 210
           G+++PSS   GM I+Y
Sbjct: 242 GSLLPSSDRGGMHIEY 257


>Glyma08g20730.2 
          Length = 264

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%)

Query: 135 CNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVCFIEFEDVNSAANVHHTLQ 194
           C+TLF            +K  FS   GF  +K+  +    V F++FE+ + AA V   LQ
Sbjct: 181 CSTLFIANLGPNCTEDELKQAFSAYTGFNMVKMRSRGGMPVAFVDFEETHQAAKVMEELQ 240

Query: 195 GAVIPSSGSVGMRIQYPFLYFKK 217
           G+++PSS   GM I+Y     +K
Sbjct: 241 GSLLPSSDRGGMHIEYARSKMRK 263


>Glyma08g20730.1 
          Length = 277

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%)

Query: 135 CNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVCFIEFEDVNSAANVHHTLQ 194
           C+TLF            +K  FS   GF  +K+  +    V F++FE+ + AA V   LQ
Sbjct: 194 CSTLFIANLGPNCTEDELKQAFSAYTGFNMVKMRSRGGMPVAFVDFEETHQAAKVMEELQ 253

Query: 195 GAVIPSSGSVGMRIQYPFLYFKK 217
           G+++PSS   GM I+Y     +K
Sbjct: 254 GSLLPSSDRGGMHIEYARSKMRK 276


>Glyma01g39560.1 
          Length = 304

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 130 KDNPPCNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVCFIEFEDVNSAANV 189
           +++ PC TLF            +  +FS  PGF ++K+       V F++F+DV S+ + 
Sbjct: 210 QNSTPCATLFVANLGSSCNEQELIQVFSRYPGFLKLKMQSTYGAPVAFVDFQDVGSSTDA 269

Query: 190 HHTLQGAVIPSSGS-VGMRIQY 210
            ++LQG ++ SS S  GMR++Y
Sbjct: 270 LNSLQGTILHSSQSGEGMRVEY 291


>Glyma11g05690.1 
          Length = 142

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 130 KDNPPCNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVCFIEFEDVNSAANV 189
           +++ PC TLF            +  +FS  PGF ++K+       V F++F+DV S+ + 
Sbjct: 48  QNSTPCATLFVANLGPSCNEQELIQVFSRYPGFLKLKMQSTYGAPVAFVDFQDVGSSTDA 107

Query: 190 HHTLQGAVIPSSGS-VGMRIQY 210
            ++LQG ++ SS S  GMR++Y
Sbjct: 108 LNSLQGTILHSSQSGEGMRLEY 129


>Glyma11g05690.2 
          Length = 117

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 130 KDNPPCNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVCFIEFEDVNSAANV 189
           +++ PC TLF            +  +FS  PGF ++K+       V F++F+DV S+ + 
Sbjct: 23  QNSTPCATLFVANLGPSCNEQELIQVFSRYPGFLKLKMQSTYGAPVAFVDFQDVGSSTDA 82

Query: 190 HHTLQGAVIPSSGS-VGMRIQY 210
            ++LQG ++ SS S  GMR++Y
Sbjct: 83  LNSLQGTILHSSQSGEGMRLEY 104