Miyakogusa Predicted Gene

Lj3g3v2037550.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2037550.1 Non Chatacterized Hit- tr|B8AFU1|B8AFU1_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,65.33,1e-17,Reticulon,Reticulon,CUFF.43462.1
         (182 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g00480.1                                                        52   5e-07
Glyma07g14860.1                                                        50   1e-06
Glyma08g24060.1                                                        49   2e-06

>Glyma03g00480.1 
          Length = 563

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 22/145 (15%)

Query: 19  REMGKAIIALVCGTLVYYHCAYRNSTVVS------LFSDVFIVL--LCSLAILGLLFRQM 70
           ++  +  IAL+    +Y++     +T++S      LF+ +F+ +  +    ILG    ++
Sbjct: 390 KDKKQTFIALLVLIAIYFNFIASENTIISALTKLLLFASIFLFIHGILPAKILGYTLEKI 449

Query: 71  NIQVPVDPLEW-QISQDTANAIVACLANTVGAAESVLRVAATGHDKRLFFKVILCLYVLS 129
                  P  W  +S+D ++ I   +A++   A +VL+  A G+D  LFFK +L L++LS
Sbjct: 450 -------PKSWFHLSEDMSHQIALSVASSWNIAVNVLKSLADGNDWVLFFKAVLSLFILS 502

Query: 130 AIGRLAL------GITIAYAGLCLF 148
            +G  +L      G+T A+    ++
Sbjct: 503 FLGAFSLQSLYTIGVTFAFIAFYVY 527


>Glyma07g14860.1 
          Length = 562

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 22/145 (15%)

Query: 19  REMGKAIIALVCGTLVYYHCAYRNSTVVS------LFSDVFIVLLCSLA--ILGLLFRQM 70
           ++  +  IAL+    +Y++     +T++S      LF+ +F+ +   L   ILG    ++
Sbjct: 389 KDKKQTFIALLVLIAIYFNFIASENTIISALTKLLLFASIFLFIHAILPAKILGFTLEKI 448

Query: 71  NIQVPVDPLEW-QISQDTANAIVACLANTVGAAESVLRVAATGHDKRLFFKVILCLYVLS 129
                  P  W  +S+  ++ I   +A++   A +VL+  A G+D  LFFKV+L L++LS
Sbjct: 449 -------PKSWFHLSEYLSHQIALSVASSWNIAVNVLKSLAEGNDWVLFFKVVLSLFILS 501

Query: 130 AIGRLAL------GITIAYAGLCLF 148
            +G  +L      G+T A+    ++
Sbjct: 502 FLGAFSLQSLYTIGVTFAFIAFYVY 526


>Glyma08g24060.1 
          Length = 45

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 27/29 (93%), Gaps = 1/29 (3%)

Query: 35 YYHCAYRNSTVVSLFSD-VFIVLLCSLAI 62
          YY CAYRNST++SLFSD VFIVLLCSLAI
Sbjct: 1  YYQCAYRNSTLLSLFSDVVFIVLLCSLAI 29