Miyakogusa Predicted Gene
- Lj3g3v2004940.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2004940.1 Non Chatacterized Hit- tr|D7U8E8|D7U8E8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,49.33,0.00000000001,zf-LSD1,Zinc finger, LSD1-type; FAMILY NOT
NAMED,NULL; seg,NULL; LSD1: zinc finger domain, LSD1 subc,CUFF.43519.1
(145 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma17g16600.4 243 6e-65
Glyma05g23710.1 243 6e-65
Glyma01g40720.1 237 3e-63
Glyma17g16600.3 224 2e-59
Glyma17g16600.1 217 4e-57
Glyma05g30490.1 174 3e-44
Glyma08g13630.1 174 3e-44
Glyma05g30490.2 171 2e-43
Glyma05g30490.3 171 2e-43
Glyma08g13630.2 171 3e-43
Glyma15g22140.2 163 7e-41
Glyma15g22140.1 162 8e-41
Glyma09g10010.1 162 1e-40
Glyma17g16600.2 152 2e-37
Glyma05g23710.2 151 2e-37
Glyma07g31600.1 98 4e-21
Glyma18g35280.1 54 6e-08
>Glyma17g16600.4
Length = 145
Score = 243 bits (619), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 123/126 (97%)
Query: 20 NGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRG 79
NG QSQLVCSGCRNLLV+PVGATSVCCAVCNAVT+VPPPGTEMAQLVCGGCHTLLMYIRG
Sbjct: 20 NGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 79
Query: 80 ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTSASTT 139
ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLL YQYGARSVKCAVCNFVTSVG +ASTT
Sbjct: 80 ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSVGATASTT 139
Query: 140 EQKFST 145
EQKFST
Sbjct: 140 EQKFST 145
>Glyma05g23710.1
Length = 145
Score = 243 bits (619), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 123/126 (97%)
Query: 20 NGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRG 79
NG QSQLVCSGCRNLLV+PVGATSVCCAVCNAVT+VPPPGTEMAQLVCGGCHTLLMYIRG
Sbjct: 20 NGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 79
Query: 80 ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTSASTT 139
ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLL YQYGARSVKCAVCNFVTSVG +ASTT
Sbjct: 80 ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSVGATASTT 139
Query: 140 EQKFST 145
EQKFST
Sbjct: 140 EQKFST 145
>Glyma01g40720.1
Length = 147
Score = 237 bits (605), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/126 (92%), Positives = 121/126 (96%)
Query: 20 NGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRG 79
NGAQSQLVCSGCRNLL+YPVGATSVCCAVCNAVT+VPPPGTEMAQLVCGGCHT LMYIRG
Sbjct: 22 NGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPGTEMAQLVCGGCHTFLMYIRG 81
Query: 80 ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTSASTT 139
ATSVQCSCCHTVNLALEAN VAHVNCGNC+MLL YQYGARSVKCAVC+FVTSVG S STT
Sbjct: 82 ATSVQCSCCHTVNLALEANLVAHVNCGNCKMLLRYQYGARSVKCAVCSFVTSVGASTSTT 141
Query: 140 EQKFST 145
EQKFST
Sbjct: 142 EQKFST 147
>Glyma17g16600.3
Length = 150
Score = 224 bits (571), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/127 (88%), Positives = 119/127 (93%), Gaps = 2/127 (1%)
Query: 20 NGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRG 79
NG QSQLVCSGCRNLLV+PVGATSVCCAVCNAVT+VPPPGTEMAQLVCGGCHTLLMYIRG
Sbjct: 20 NGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 79
Query: 80 ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTS--AS 137
ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLL YQYGARSVKCAVCNFVTSVG S +
Sbjct: 80 ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSVGVSVISY 139
Query: 138 TTEQKFS 144
++ +FS
Sbjct: 140 SSLTRFS 146
>Glyma17g16600.1
Length = 150
Score = 217 bits (552), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/127 (86%), Positives = 116/127 (91%), Gaps = 2/127 (1%)
Query: 20 NGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRG 79
NG QSQLVCSGCRNLLV+PVGATSVCCAVCNAVT+VPPPGTEMAQLVCGGCHTLLMYIRG
Sbjct: 20 NGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 79
Query: 80 ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTS--AS 137
ATSVQCSCCHTVNLALE VAHVNCGNCRMLL YQYGARSVKCAVCNFVTSVG S +
Sbjct: 80 ATSVQCSCCHTVNLALEGIVVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSVGVSVISY 139
Query: 138 TTEQKFS 144
++ +FS
Sbjct: 140 SSLTRFS 146
>Glyma05g30490.1
Length = 177
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/114 (73%), Positives = 99/114 (86%), Gaps = 1/114 (0%)
Query: 23 QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATS 82
QSQ+VC+GCR+LL+YP GAT+VCCA+CN +TSVPPPG EM+QL CGGC TLLMY RGATS
Sbjct: 2 QSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATS 61
Query: 83 VQCSCCHTVNLALEA-NQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTS 135
V+CSCCHTVNL A NQVAHV+CGNCR LMY YGA SVKCA+C+F+T+V T+
Sbjct: 62 VRCSCCHTVNLVPPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITNVSTN 115
>Glyma08g13630.1
Length = 177
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/114 (73%), Positives = 99/114 (86%), Gaps = 1/114 (0%)
Query: 23 QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATS 82
QSQ+VC+GCR+LL+YP GAT+VCCA+CN +TSVPPPG EM+QL CGGC TLLMY RGATS
Sbjct: 2 QSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATS 61
Query: 83 VQCSCCHTVNLALEA-NQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTS 135
V+CSCCHTVNL A NQVAHV+CGNCR LMY YGA SVKCA+C+F+T+V T+
Sbjct: 62 VRCSCCHTVNLVPPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITNVSTN 115
>Glyma05g30490.2
Length = 147
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/114 (73%), Positives = 99/114 (86%), Gaps = 1/114 (0%)
Query: 23 QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATS 82
QSQ+VC+GCR+LL+YP GAT+VCCA+CN +TSVPPPG EM+QL CGGC TLLMY RGATS
Sbjct: 2 QSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATS 61
Query: 83 VQCSCCHTVNLALEA-NQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTS 135
V+CSCCHTVNL A NQVAHV+CGNCR LMY YGA SVKCA+C+F+T+V T+
Sbjct: 62 VRCSCCHTVNLVPPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITNVSTN 115
>Glyma05g30490.3
Length = 175
Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 96/110 (87%), Gaps = 1/110 (0%)
Query: 23 QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATS 82
QSQ+VC+GCR+LL+YP GAT+VCCA+CN +TSVPPPG EM+QL CGGC TLLMY RGATS
Sbjct: 2 QSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATS 61
Query: 83 VQCSCCHTVNLALEA-NQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTS 131
V+CSCCHTVNL A NQVAHV+CGNCR LMY YGA SVKCA+C+F+T+
Sbjct: 62 VRCSCCHTVNLVPPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITN 111
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 63 AQLVCGGCHTLLMYIRGATSVQCSCCHTV-NLALEANQVAHVNCGNCRMLLMYQYGARSV 121
+Q+VC GC +LL+Y RGAT+V C+ C+T+ ++ +++ + CG CR LLMY GA SV
Sbjct: 3 SQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSV 62
Query: 122 KCAVCNFVTSV 132
+C+ C+ V V
Sbjct: 63 RCSCCHTVNLV 73
>Glyma08g13630.2
Length = 175
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 96/110 (87%), Gaps = 1/110 (0%)
Query: 23 QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATS 82
QSQ+VC+GCR+LL+YP GAT+VCCA+CN +TSVPPPG EM+QL CGGC TLLMY RGATS
Sbjct: 2 QSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATS 61
Query: 83 VQCSCCHTVNLALEA-NQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTS 131
V+CSCCHTVNL A NQVAHV+CGNCR LMY YGA SVKCA+C+F+T+
Sbjct: 62 VRCSCCHTVNLVPPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITN 111
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 63 AQLVCGGCHTLLMYIRGATSVQCSCCHTV-NLALEANQVAHVNCGNCRMLLMYQYGARSV 121
+Q+VC GC +LL+Y RGAT+V C+ C+T+ ++ +++ + CG CR LLMY GA SV
Sbjct: 3 SQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSV 62
Query: 122 KCAVCNFVTSV 132
+C+ C+ V V
Sbjct: 63 RCSCCHTVNLV 73
>Glyma15g22140.2
Length = 176
Score = 163 bits (412), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 93/111 (83%), Gaps = 4/111 (3%)
Query: 24 SQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83
SQLVC+GCRN+LVYP GAT+VCCA+CN VTSVPPPG +M+QL CGGC TLLMY RGATSV
Sbjct: 3 SQLVCNGCRNILVYPRGATNVCCALCNTVTSVPPPGMDMSQLYCGGCTTLLMYTRGATSV 62
Query: 84 QCSCCHTVNL--ALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSV 132
+CSCCHT+NL LE+NQV H C NCR LMY YGA SVKCA+C ++T+V
Sbjct: 63 RCSCCHTINLVPVLESNQVIH--CTNCRTTLMYPYGASSVKCAICRYITNV 111
>Glyma15g22140.1
Length = 180
Score = 162 bits (411), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 93/111 (83%), Gaps = 4/111 (3%)
Query: 24 SQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83
SQLVC+GCRN+LVYP GAT+VCCA+CN VTSVPPPG +M+QL CGGC TLLMY RGATSV
Sbjct: 3 SQLVCNGCRNILVYPRGATNVCCALCNTVTSVPPPGMDMSQLYCGGCTTLLMYTRGATSV 62
Query: 84 QCSCCHTVNL--ALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSV 132
+CSCCHT+NL LE+NQV H C NCR LMY YGA SVKCA+C ++T+V
Sbjct: 63 RCSCCHTINLVPVLESNQVIH--CTNCRTTLMYPYGASSVKCAICRYITNV 111
>Glyma09g10010.1
Length = 174
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 93/110 (84%), Gaps = 2/110 (1%)
Query: 23 QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATS 82
+SQLVC+GCR++LVYP GAT+VCCA+CN +TSVPPPG +M+QL CGGC TLLMY RGATS
Sbjct: 2 RSQLVCNGCRSILVYPRGATNVCCALCNTITSVPPPGMDMSQLYCGGCTTLLMYTRGATS 61
Query: 83 VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSV 132
V+CSCCHT+NL E+NQV H C NCR LMY YGA SVKCA+C ++T++
Sbjct: 62 VRCSCCHTINLVPESNQVIH--CANCRTTLMYPYGASSVKCAICCYITNI 109
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 63 AQLVCGGCHTLLMYIRGATSVQCSCCHTV-NLALEANQVAHVNCGNCRMLLMYQYGARSV 121
+QLVC GC ++L+Y RGAT+V C+ C+T+ ++ ++ + CG C LLMY GA SV
Sbjct: 3 SQLVCNGCRSILVYPRGATNVCCALCNTITSVPPPGMDMSQLYCGGCTTLLMYTRGATSV 62
Query: 122 KCAVCNFVTSVGTS 135
+C+ C+ + V S
Sbjct: 63 RCSCCHTINLVPES 76
>Glyma17g16600.2
Length = 106
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 20 NGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRG 79
NG QSQLVCSGCRNLLV+PVGATSVCCAVCNAVT+VPPPGTEMAQLVCGGCHTLLMYIRG
Sbjct: 20 NGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 79
Query: 80 ATSVQCSCCHTVNLALEA 97
ATSVQCSCCHTVNLALE
Sbjct: 80 ATSVQCSCCHTVNLALEG 97
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 63 AQLVCGGCHTLLMYIRGATSVQCSCCHTVN-LALEANQVAHVNCGNCRMLLMYQYGARSV 121
+QLVC GC LL++ GATSV C+ C+ V + ++A + CG C LLMY GA SV
Sbjct: 24 SQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83
Query: 122 KCAVCNFV 129
+C+ C+ V
Sbjct: 84 QCSCCHTV 91
>Glyma05g23710.2
Length = 123
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 20 NGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRG 79
NG QSQLVCSGCRNLLV+PVGATSVCCAVCNAVT+VPPPGTEMAQLVCGGCHTLLMYIRG
Sbjct: 20 NGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 79
Query: 80 ATSVQCSCCHTVNLALE 96
ATSVQCSCCHTVNLALE
Sbjct: 80 ATSVQCSCCHTVNLALE 96
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 63 AQLVCGGCHTLLMYIRGATSVQCSCCHTVN-LALEANQVAHVNCGNCRMLLMYQYGARSV 121
+QLVC GC LL++ GATSV C+ C+ V + ++A + CG C LLMY GA SV
Sbjct: 24 SQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83
Query: 122 KCAVCNFV 129
+C+ C+ V
Sbjct: 84 QCSCCHTV 91
>Glyma07g31600.1
Length = 128
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 57/92 (61%), Gaps = 14/92 (15%)
Query: 56 PPPGTE--------------MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVA 101
PPPG + AQ+VCG C LL Y RGA V+CSCC TVN+ LEA+QV
Sbjct: 15 PPPGWQPLPAQPPPPPRPSGWAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVG 74
Query: 102 HVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG 133
V CG+C +LLMY YGA V+C+ C FVT +G
Sbjct: 75 QVKCGSCAVLLMYPYGASQVRCSSCRFVTEIG 106
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 24 SQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83
+Q+VC CR LL YP GA V C+ C V V ++ Q+ CG C LLMY GA+ V
Sbjct: 36 AQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV-LEADQVGQVKCGSCAVLLMYPYGASQV 94
Query: 84 QCSCCHTV 91
+CS C V
Sbjct: 95 RCSSCRFV 102
>Glyma18g35280.1
Length = 31
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 61 EMAQLVCGGCHTLLMYIRGATSVQCSCCHT 90
EM+QL CGGC TLLMY RG TSV+CSCCHT
Sbjct: 2 EMSQLYCGGCRTLLMYTRGTTSVRCSCCHT 31