Miyakogusa Predicted Gene

Lj3g3v1981160.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1981160.1 tr|A4RTR8|A4RTR8_OSTLU Predicted protein
(Fragment) OS=Ostreococcus lucimarinus (strain CCE9901)
GN=,54.65,6e-19,RNA recognition motif,RNA recognition motif domain;
RRM,RNA recognition motif domain; SPLICING FACTO,TC76613.path1.1
         (114 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g48230.2                                                       158   1e-39
Glyma06g48230.3                                                       158   1e-39
Glyma06g48230.1                                                       158   1e-39
Glyma04g43500.3                                                       157   2e-39
Glyma04g43500.2                                                       157   2e-39
Glyma04g43500.1                                                       157   2e-39
Glyma10g00760.1                                                        47   5e-06

>Glyma06g48230.2 
          Length = 510

 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 78/86 (90%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  LPPTANEQSVATFFSQVMA IGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 233 QATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVE 292

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 293 MRSVEEASNAMALDGIIFEGAPVKVR 318


>Glyma06g48230.3 
          Length = 510

 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 78/86 (90%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  LPPTANEQSVATFFSQVMA IGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 233 QATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVE 292

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 293 MRSVEEASNAMALDGIIFEGAPVKVR 318


>Glyma06g48230.1 
          Length = 575

 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 78/86 (90%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  LPPTANEQSVATFFSQVMA IGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 233 QATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVE 292

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 293 MRSVEEASNAMALDGIIFEGAPVKVR 318


>Glyma04g43500.3 
          Length = 535

 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 78/86 (90%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  LPPTANEQSVATFFSQVMA IGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 258 QATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVE 317

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 318 MRSVEEASNAMALDGIIFEGAPVKVR 343


>Glyma04g43500.2 
          Length = 573

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 78/86 (90%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  LPPTANEQSVATFFSQVMA IGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 258 QATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVE 317

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 318 MRSVEEASNAMALDGIIFEGAPVKVR 343


>Glyma04g43500.1 
          Length = 600

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 78/86 (90%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  LPPTANEQSVATFFSQVMA IGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 258 QATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVE 317

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 318 MRSVEEASNAMALDGIIFEGAPVKVR 343


>Glyma10g00760.1 
          Length = 618

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 48/86 (55%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATR  RR+ +E+LP +A+E++V   F+ ++ +   N        +   ++ D   A VE
Sbjct: 488 QATRPIRRLYLENLPASASEKAVMDCFNNLLLSARVNHIQQAQPCICCILHKDKGQALVE 547

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
             + ++AS A++ DG +  G+ VK+R
Sbjct: 548 FLTADDASAALSFDGSMLFGSIVKIR 573