Miyakogusa Predicted Gene

Lj3g3v1933050.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1933050.2 tr|A8HSE8|A8HSE8_CHLRE HMGB protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_187927 PE=4
SV=1,41.58,2e-17,FAMILY NOT NAMED,NULL; no description,ARID/BRIGHT
DNA-binding domain; no description,High mobility g,CUFF.43316.2
         (338 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g48010.1                                                       394   e-110
Glyma04g12530.1                                                       354   6e-98
Glyma04g02210.1                                                       228   8e-60
Glyma10g44040.1                                                       224   8e-59
Glyma20g38760.1                                                       177   1e-44
Glyma10g44030.1                                                        87   4e-17
Glyma11g09370.2                                                        54   2e-07
Glyma11g09370.1                                                        54   2e-07
Glyma01g36040.1                                                        54   3e-07

>Glyma06g48010.1 
          Length = 339

 Score =  394 bits (1013), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/320 (62%), Positives = 235/320 (73%), Gaps = 36/320 (11%)

Query: 33  YPPPTALYQDLTRDANLFWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEK 92
           YP PTA YQD+ RDANLFW  LQ+FHK+ GTK+K+ T+GG PLDL+RLF+EVTSRGG+EK
Sbjct: 38  YPAPTARYQDIVRDANLFWGTLQAFHKTLGTKYKISTVGGTPLDLHRLFVEVTSRGGIEK 97

Query: 93  VLDDRKWKEVILAFKFRDTITSASFMVRRYYLSLLYHFEQVYYFRKQVPPSSTPD---PG 149
           V+ DRKWKEVIL F F+DTIT+ASFMVR+ YLS+LYHFEQVYYF +Q  P +TPD    G
Sbjct: 98  VIVDRKWKEVILTFNFKDTITNASFMVRKSYLSMLYHFEQVYYFGRQGIPPTTPDLMIRG 157

Query: 150 NRSLANSSTPIREGAAVNDIPVQVSPAQTPGSVVPGTIDGNLNAXXXXXXXXXXXXXXID 209
                 SST I E AAVND PVQ +P Q    +V GT                     ID
Sbjct: 158 QSCQPYSSTTIPEVAAVNDSPVQSTPVQAHDDMVSGT---------------------ID 196

Query: 210 GKFDGGYIVTVSLGSEQVKGILYHVPDNVSQSSYAEGMPS------------SRKKSKSA 257
            KFD GY+VTV+LGSEQ++G+L+HVPDNVSQSS+AEG  S            SRK++K A
Sbjct: 197 AKFDVGYVVTVTLGSEQLQGVLFHVPDNVSQSSHAEGTSSSQNLGDDTSNLQSRKRAKYA 256

Query: 258 LRDPSLPKSNRSGYNFFFAENYARLRPSFQGQEKEISKRIGFLWSNLSEAERQVYQDKAL 317
            RDP  PKSNRSGYNFFFAENYARL+PS+ GQE+ ISKRIGFLW+NLSEAERQVYQ+K +
Sbjct: 257 PRDPFRPKSNRSGYNFFFAENYARLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGI 316

Query: 318 RDKERYQTGMQEYKSNHPAP 337
           RDKERY+T + EYKSN+  P
Sbjct: 317 RDKERYRTELMEYKSNNSTP 336


>Glyma04g12530.1 
          Length = 313

 Score =  354 bits (909), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 185/318 (58%), Positives = 217/318 (68%), Gaps = 59/318 (18%)

Query: 32  PYPPPTALYQDLTRDANLFWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLE 91
           PYP PTA YQD+ RDANLFW  LQ+FHK  GTK+KV T+GG  LDL+RLF+EVTSRGG+E
Sbjct: 40  PYPAPTARYQDIVRDANLFWGTLQAFHKILGTKYKVATVGGTSLDLHRLFVEVTSRGGIE 99

Query: 92  KVLDDRKWKEVILAFKFRDTITSASFMVRRYYLSLLYHFEQVYYFRKQVPPSSTPDPGNR 151
           KV+ DRKWKEVIL F F+DTITSASF+VR+ YLS+LYH+EQVYYF +Q  P  T      
Sbjct: 100 KVIVDRKWKEVILTFNFKDTITSASFVVRKSYLSMLYHYEQVYYFGRQGIPPPT------ 153

Query: 152 SLANSSTPIREGAAVNDIPVQVSPAQTPGSVVPGTIDGNLNAXXXXXXXXXXXXXXIDGK 211
                                 +P Q    +V GT                     ID K
Sbjct: 154 --------------------PGTPVQAHDDMVSGT---------------------IDAK 172

Query: 212 FDGGYIVTVSLGSEQVKGILYHVPDNVSQSSYAEGMPS------------SRKKSKSALR 259
           FDGGY+VTV LGSEQ+KG+L+HVPDNVSQSS+AEG  S            SRK++K A R
Sbjct: 173 FDGGYVVTVILGSEQLKGVLFHVPDNVSQSSHAEGTSSSQNLGDGTSNSQSRKRAKYAPR 232

Query: 260 DPSLPKSNRSGYNFFFAENYARLRPSFQGQEKEISKRIGFLWSNLSEAERQVYQDKALRD 319
           DP  PKSNRSGYNFFFAENYARL+PS+ GQE+ ISKRIGFLW+NLSEAERQVYQ+K +RD
Sbjct: 233 DPFRPKSNRSGYNFFFAENYARLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGMRD 292

Query: 320 KERYQTGMQEYKSNHPAP 337
           KERY+T + EYKSN+  P
Sbjct: 293 KERYRTELMEYKSNNSTP 310


>Glyma04g02210.1 
          Length = 322

 Score =  228 bits (581), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 133/322 (41%), Positives = 187/322 (58%), Gaps = 38/322 (11%)

Query: 26  GNGNANPYPPPTALYQDLTRDANLFWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVT 85
           G      YP P A ++ + +D+ LFW+ L+ FH   GTKF +P IGGK LDL+ L++EVT
Sbjct: 9   GGEEGKHYPAPLAPHEGVVKDSTLFWDTLRRFHFVMGTKFMIPVIGGKELDLHVLYVEVT 68

Query: 86  SRGGLEKVLDDRKWKEVILAFKFRDTITSASFMVRRYYLSLLYHFEQVYYFRKQVPPSST 145
            R G EKV+ ++KW+EV   FKF  T TSASF++R++Y SLLYH+EQV++F+ + P  + 
Sbjct: 69  RRSGYEKVVAEKKWREVGSVFKFAATTTSASFVLRKHYFSLLYHYEQVHFFKARGPIYT- 127

Query: 146 PDPGNRSLANSSTPIREGAAVNDIPVQVSPA---QTPGSVVPGT--IDGNLNAXXXXXXX 200
             P   + + +S   R   A+    V+ SP     +P S    T  + GN          
Sbjct: 128 --PSADAFSGNSPSWRPELAI----VEYSPKPMDNSPESRAEDTSCLSGN---------- 171

Query: 201 XXXXXXXIDGKFDGGYIVTVSLGSEQVKGILYH----VPDNVSQSSYAEGMPSSRKKSKS 256
                  I+GKFD GY+V+V LGSE ++G+LYH    VP        +  +P +RK  +S
Sbjct: 172 -----GTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQLVPPPSIPKHESAIVPINRKPHRS 226

Query: 257 ALR-------DPSLPKSNRSGYNFFFAENYARLRPSFQGQEKEISKRIGFLWSNLSEAER 309
             R       DP+ PK NRSGYNFFFAE +  L+  +  +E+E +K IG  W++LS  ER
Sbjct: 227 GRRKKNKRRWDPNYPKPNRSGYNFFFAEKHYTLKTLYPNREREFTKMIGQSWNSLSPEER 286

Query: 310 QVYQDKALRDKERYQTGMQEYK 331
            VYQ+  LRDKERY+  + EYK
Sbjct: 287 MVYQNIGLRDKERYKRELTEYK 308


>Glyma10g44040.1 
          Length = 354

 Score =  224 bits (572), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 121/286 (42%), Positives = 176/286 (61%), Gaps = 35/286 (12%)

Query: 67  VPTIGGKPLDLYRLFIEVTSRGGLEKVLDDRKWKEVILAFKFRDTITSASFMVRRYYLSL 126
           +P +GG+ LDL+RLF+EVTSRGG+ K++ +RKWK+V   F F  T T+ASF++R+YY SL
Sbjct: 1   IPIVGGRELDLHRLFVEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASL 60

Query: 127 LYHFEQVYYFRKQVPPSSTPDPGNRSLANSSTPIREGAAVNDIPVQVSPAQTP---GSVV 183
           LYH+EQ+Y+F+ +    + PD    +L N ST          +PV     Q P     + 
Sbjct: 61  LYHYEQIYFFKAREWDPTAPD----ALQNQST----------LPVPPPKMQFPQPLSEIQ 106

Query: 184 PGTI-DGNLNAXX--XXXXXXXXXXXXIDGKFDGGYIVTVSLGSEQVKGILYHVPDNV-- 238
           P      N+NA                IDGKF+ GY+VTV++GSE++KG+LY  P N   
Sbjct: 107 PAVFQQSNINAAKLPEASSAGSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPVL 166

Query: 239 -----------SQSSYAEGMPSSRKKSKSAL--RDPSLPKSNRSGYNFFFAENYARLRPS 285
                      + +S + G+   R++ KS +  RDP+ PK NRSGYNFFFAE +ARL+  
Sbjct: 167 VASHHSASAKNNNASASLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLL 226

Query: 286 FQGQEKEISKRIGFLWSNLSEAERQVYQDKALRDKERYQTGMQEYK 331
             G+++EIS+ IG LW+ L E+E+ VYQ+KA++DKERY+  M++Y+
Sbjct: 227 HHGKDREISRMIGELWNKLKESEKTVYQEKAMKDKERYRAEMEDYR 272


>Glyma20g38760.1 
          Length = 326

 Score =  177 bits (449), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/254 (38%), Positives = 152/254 (59%), Gaps = 23/254 (9%)

Query: 93  VLDDRKWKEVILAFKFRDTITSASFMVRRYYLSLLYHFEQVYYFRKQVPPSSTPDPGNRS 152
           ++ +RKWK+V   F F  T T+ASF++R+YY+SLLYH+EQ+Y+F+ +      P+P + +
Sbjct: 1   IIRERKWKDVTSVFNFPSTATNASFVLRKYYVSLLYHYEQIYFFKAREWDPIAPEPIDPA 60

Query: 153 LANSSTPIREGAAVNDIPVQVSPAQTPGSVVPGTIDGNLNAXXXXXXXXXXXXXXIDGKF 212
            ++S   +      N        + +  S V       L++              IDGKF
Sbjct: 61  SSSSKNAVSAAFVRN--------STSCLSTVKLLFIPLLSSAMAASSAGSPVIGVIDGKF 112

Query: 213 DGGYIVTVSLGSEQVKGILYHVPDN-------------VSQSSYAEGMPSSRKKSKSAL- 258
           + GY+VTV++GSE++KG+LY  P N              + +S + G+   R++ KS + 
Sbjct: 113 ESGYLVTVTIGSEKLKGVLYQAPQNPVLTASHHSASANNNNASASLGVHRRRRRKKSEIK 172

Query: 259 -RDPSLPKSNRSGYNFFFAENYARLRPSFQGQEKEISKRIGFLWSNLSEAERQVYQDKAL 317
            RDP+ PK NRSGYNFFFAE +ARL+    G+++EIS+ IG LW+ L E+E+ VYQ+KA+
Sbjct: 173 RRDPAHPKPNRSGYNFFFAEQHARLKLLHHGKDREISRMIGELWNKLKESEKTVYQEKAM 232

Query: 318 RDKERYQTGMQEYK 331
           +DKERY+  M++Y+
Sbjct: 233 KDKERYRVEMEDYR 246


>Glyma10g44030.1 
          Length = 117

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 69/102 (67%), Gaps = 12/102 (11%)

Query: 208 IDGKFDGGYIVTVSLGSEQVKGILYHV---------PDNVSQSSYAEGM-PSSRKKSKSA 257
           ID KF+GGY+VTV++GSEQ+ G+LY+          P + + ++ A  +    R++SKS 
Sbjct: 15  IDQKFEGGYVVTVTMGSEQLNGVLYYAQEDSVLLPAPSHNNNNAAAASLQKKKRRRSKSE 74

Query: 258 L--RDPSLPKSNRSGYNFFFAENYARLRPSFQGQEKEISKRI 297
           +  R+P+LPK  ++GYNFFFAE +ARL+P  QG+E +I + I
Sbjct: 75  IKRRNPALPKPKKTGYNFFFAEEHARLKPYHQGKETDIGRMI 116


>Glyma11g09370.2 
          Length = 456

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 50  FWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEKVLDDRKWKEVILAFKFR 109
           F + L++F +    +FK P   G+ L+  +L+  VT  GG +KV   + W++V  +FK  
Sbjct: 238 FMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPP 297

Query: 110 DTITSASFMVRRYYLSLLYHFE--QVYYFRKQVPPSSTPDPGN 150
            T T+ S+  R +Y   L  +E  ++      VP +S P+P N
Sbjct: 298 KTCTTVSWTFRGFYEKALLDYERHKIQGGELNVPVASHPEPIN 340


>Glyma11g09370.1 
          Length = 528

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 50  FWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEKVLDDRKWKEVILAFKFR 109
           F + L++F +    +FK P   G+ L+  +L+  VT  GG +KV   + W++V  +FK  
Sbjct: 238 FMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPP 297

Query: 110 DTITSASFMVRRYYLSLLYHFE--QVYYFRKQVPPSSTPDPGN 150
            T T+ S+  R +Y   L  +E  ++      VP +S P+P N
Sbjct: 298 KTCTTVSWTFRGFYEKALLDYERHKIQGGELNVPVASHPEPIN 340


>Glyma01g36040.1 
          Length = 511

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 50  FWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEKVLDDRKWKEVILAFKFR 109
           F + L++F +    +FK P   G+ L+  +L+  VT  GG +KV   + W++V  +FK  
Sbjct: 230 FMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPP 289

Query: 110 DTITSASFMVRRYYLSLLYHFE--QVYYFRKQVPPSSTPDPGN 150
            T T+ S+  R +Y   L  +E  ++      VP +S P+P N
Sbjct: 290 KTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPVASHPEPIN 332