Miyakogusa Predicted Gene

Lj3g3v1683560.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1683560.1 tr|B9HP97|B9HP97_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_650201 PE=4
SV=1,75,9e-19,seg,NULL,CUFF.42987.1
         (96 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g03790.1                                                       115   1e-26
Glyma13g41610.1                                                       104   3e-23
Glyma13g41610.2                                                       103   3e-23
Glyma11g11860.1                                                        96   8e-21
Glyma11g11860.2                                                        96   1e-20
Glyma12g04140.1                                                        59   1e-09

>Glyma15g03790.1 
          Length = 154

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 62/96 (64%)

Query: 1  MARALGSTVDGLRNYSLLRFSLSFIRTLXXXXXXXXXXXXXXXXXXXXXXXXXNLFEVAQ 60
          MA AL S V+ +RN   LRFSL+FIR L                         NLFEVAQ
Sbjct: 1  MASALSSRVESVRNSPFLRFSLNFIRALSSSSSSSSAVSSAENLKKSKRRKKKNLFEVAQ 60

Query: 61 FLPNWGIGYHMAKTHWKEITYEITKINLYKDGKHGK 96
          FLPNWGIGYHMAKTHW E++YEITKINLYKDG+HGK
Sbjct: 61 FLPNWGIGYHMAKTHWNEVSYEITKINLYKDGRHGK 96


>Glyma13g41610.1 
          Length = 178

 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 61/99 (61%), Gaps = 3/99 (3%)

Query: 1   MARALGSTVDGLRNYSLLRFSLSFIRTLXXXXXXXXXXXXX---XXXXXXXXXXXXNLFE 57
           MA AL S V+ +RN   LRFSL+ IR L                            NLFE
Sbjct: 27  MASALSSRVESVRNSPSLRFSLNCIRALSSSSSSSSAAAAVSSGENPNKSKRRKKKNLFE 86

Query: 58  VAQFLPNWGIGYHMAKTHWKEITYEITKINLYKDGKHGK 96
           VAQFLPNWGIGYHMAKTHW E++YEITKINLYKDG+HGK
Sbjct: 87  VAQFLPNWGIGYHMAKTHWNEVSYEITKINLYKDGRHGK 125


>Glyma13g41610.2 
          Length = 152

 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 61/99 (61%), Gaps = 3/99 (3%)

Query: 1  MARALGSTVDGLRNYSLLRFSLSFIRTLXXXXXXXXXXXXX---XXXXXXXXXXXXNLFE 57
          MA AL S V+ +RN   LRFSL+ IR L                            NLFE
Sbjct: 1  MASALSSRVESVRNSPSLRFSLNCIRALSSSSSSSSAAAAVSSGENPNKSKRRKKKNLFE 60

Query: 58 VAQFLPNWGIGYHMAKTHWKEITYEITKINLYKDGKHGK 96
          VAQFLPNWGIGYHMAKTHW E++YEITKINLYKDG+HGK
Sbjct: 61 VAQFLPNWGIGYHMAKTHWNEVSYEITKINLYKDGRHGK 99


>Glyma11g11860.1 
          Length = 153

 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 59/96 (61%), Gaps = 1/96 (1%)

Query: 1  MARALGSTVDGLRNYSLLRFSLSFIRTLXXXXXXXXXXXXXXXXXXXXXXXXXNLFEVAQ 60
          MA ALGS V+ +RN  LL FSL+                              NLF+VAQ
Sbjct: 1  MASALGSRVESVRNSHLLSFSLN-SIRSLSSSSSSAVSSAQNPKTKKSKRRKKNLFDVAQ 59

Query: 61 FLPNWGIGYHMAKTHWKEITYEITKINLYKDGKHGK 96
          FLPNWGIGYHMAKTHW E++YEITKINLYKDG+HGK
Sbjct: 60 FLPNWGIGYHMAKTHWNEVSYEITKINLYKDGRHGK 95


>Glyma11g11860.2 
          Length = 119

 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 59/96 (61%), Gaps = 1/96 (1%)

Query: 1  MARALGSTVDGLRNYSLLRFSLSFIRTLXXXXXXXXXXXXXXXXXXXXXXXXXNLFEVAQ 60
          MA ALGS V+ +RN  LL FSL+                              NLF+VAQ
Sbjct: 1  MASALGSRVESVRNSHLLSFSLN-SIRSLSSSSSSAVSSAQNPKTKKSKRRKKNLFDVAQ 59

Query: 61 FLPNWGIGYHMAKTHWKEITYEITKINLYKDGKHGK 96
          FLPNWGIGYHMAKTHW E++YEITKINLYKDG+HGK
Sbjct: 60 FLPNWGIGYHMAKTHWNEVSYEITKINLYKDGRHGK 95


>Glyma12g04140.1 
          Length = 68

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 9  VDGLRNYSLLRFSLSFIRTLXXXXXXXXXXXXXXXXXXXXXXXXXNLFEVAQFLPNWGIG 68
          V+ +RN  L+RFS++FIR+                          NL +VA+FL NWGIG
Sbjct: 1  VESVRNSPLVRFSINFIRSFGSSSSSSAVSSAQNPKKSKRRKK--NLLDVAEFLSNWGIG 58

Query: 69 YHMAKTHWKE 78
          YHMAKTHW E
Sbjct: 59 YHMAKTHWNE 68