Miyakogusa Predicted Gene
- Lj3g3v1556590.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1556590.1 tr|B9I081|B9I081_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_569063 PE=4
SV=1,55.84,0.00000000000001,Oxygen-evolving enhancer protein
3,,PsbQ-like domain; PsbQ,Photosystem II PsbQ, oxygen evolving
comp,CUFF.42793.1
(245 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma12g34320.1 377 e-105
Glyma13g36240.1 348 3e-96
Glyma03g26740.1 69 4e-12
Glyma07g14340.1 68 8e-12
Glyma07g14340.2 64 1e-10
Glyma18g05320.1 54 2e-07
Glyma11g31950.2 52 5e-07
Glyma01g06110.1 50 2e-06
>Glyma12g34320.1
Length = 250
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/252 (75%), Positives = 218/252 (86%), Gaps = 9/252 (3%)
Query: 1 MNHLSFSNPTHYYMSSFTT-MAPLTNLHG-VSKNLTPITC-LPNVHRTL-RRGHVVGFLG 56
MNHLSFS+ TH MSSFTT MAP+TNLHG VSK L PITC LPN H+++ +RG V+GFLG
Sbjct: 1 MNHLSFSDLTH--MSSFTTIMAPVTNLHGAVSKTLIPITCHLPNAHKSITKRGQVIGFLG 58
Query: 57 RKSQ-EFSECSVQSTRRAAAISFASLLLTGQFKDNVSLA-DNGFWI-DGPLPEPIVINKI 113
K+Q E SEC VQ+TRRAAA+ A+++LT QF D VSLA DNGFW D PLP P V N I
Sbjct: 59 SKAQKEASECQVQATRRAAALGLATVVLTWQFNDKVSLAKDNGFWYEDHPLPGPTVTNNI 118
Query: 114 ANEKTGTRSFLKKRLYMANIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKST 173
ANEKTGTRSFLK+ LY+ANIGVKGSV+RIKKYAFDLLAMADL+ EDTLNYVR+YLRLKST
Sbjct: 119 ANEKTGTRSFLKRGLYIANIGVKGSVFRIKKYAFDLLAMADLIAEDTLNYVRKYLRLKST 178
Query: 174 FMYHDFDKVISATPVDEKQQLTDMANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKE 233
FMY+DFDKVISA PVD+KQQLTDMANKLFDNFE+LEEASRKK+L ETKSCYQE+E++LKE
Sbjct: 179 FMYYDFDKVISAIPVDDKQQLTDMANKLFDNFERLEEASRKKSLPETKSCYQETEVMLKE 238
Query: 234 VMDRMTAMYKTI 245
VMD+M MYK+I
Sbjct: 239 VMDKMDIMYKSI 250
>Glyma13g36240.1
Length = 233
Score = 348 bits (894), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 171/233 (73%), Positives = 201/233 (86%), Gaps = 7/233 (3%)
Query: 20 MAPLTNLHG-VSKNLTPITC-LPNVHRTL-RRGHVVGFLGRKS--QEFSECSVQSTRRAA 74
MAPLTNLHG VSK L PITC LPN H+++ +RG V+GFLG K+ ++ SEC+VQ+TRRAA
Sbjct: 1 MAPLTNLHGAVSKTLIPITCHLPNAHKSITKRGQVIGFLGSKTHQKDASECAVQATRRAA 60
Query: 75 AISFASLLLTGQFKDNVSLA-DNGFWI-DGPLPEPIVINKIANEKTGTRSFLKKRLYMAN 132
A+ A+++LT +F D +SLA DNGFW D PLP P V N IAN KTGTRSFLK+ +Y+AN
Sbjct: 61 ALGLATVVLTWKFNDKISLAKDNGFWYEDHPLPGPTVTNNIANAKTGTRSFLKRGIYIAN 120
Query: 133 IGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHDFDKVISATPVDEKQ 192
IGVKGSV+RIKKYAFDLLAMADL+ EDTLNYVR+YLRLKSTFMY+DFDK+I A PVD+KQ
Sbjct: 121 IGVKGSVFRIKKYAFDLLAMADLIAEDTLNYVRKYLRLKSTFMYYDFDKIIPAIPVDDKQ 180
Query: 193 QLTDMANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKEVMDRMTAMYKTI 245
QLTDMANKLFDNFE+LEEASRKK+L ETKSCYQE+E++LKEVMDRM MYKTI
Sbjct: 181 QLTDMANKLFDNFERLEEASRKKSLPETKSCYQETEVMLKEVMDRMDIMYKTI 233
>Glyma03g26740.1
Length = 232
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 28/238 (11%)
Query: 19 TMAPLTNLHGVSKNLTPITCLP---NVHRTLRRGHV--VGFLGR-KSQEFSECSVQSTRR 72
MA +T+L G S+ + + NV R V GF R + Q+ + VQS+RR
Sbjct: 4 AMASMTSLRGSSQAVLEGSLGSTRLNVGSGSRVASVTRAGFTVRAQQQQVNGGEVQSSRR 63
Query: 73 AAAISFASLLLTGQFKDNVSLADNGFWIDGPLPEPIVINKI------------ANEKTGT 120
A A+ L TG F V LAD +PI + ++E
Sbjct: 64 AVLSLVAAGLTTGSFVQAV-LAD---------AKPIKVGPPPPPSGGLPGTLNSDEPRDL 113
Query: 121 RSFLKKRLYMANIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHDFD 180
+ LK R ++ + + R K+ A +++ + L+++ YV+ LRL++ ++ D +
Sbjct: 114 KLPLKDRFFLQPLSPTDAAQRAKESAKEIVGVKKLIEKKAWPYVQNDLRLRAEYLRFDLN 173
Query: 181 KVISATPVDEKQQLTDMANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKEVMDRM 238
VI+A P DEK+ L ++ KLF + L+ A++ K+ E + Y + L +V+ ++
Sbjct: 174 TVIAAKPKDEKKSLKELTGKLFQDISNLDHAAKIKSSPEAEKYYAATVSSLNDVLAKL 231
>Glyma07g14340.1
Length = 236
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 32/242 (13%)
Query: 19 TMAPLTNLHGVSK-------NLTPITCLPNVHRTLRRGHV--VGFLGRKSQEFSECSVQS 69
MA + L G S+ ++ T L NV R V GF R Q+ VQS
Sbjct: 4 AMASMAGLRGSSQAVLEGSLQVSGSTRL-NVGSGSRVASVTRAGFTVRAQQQQVSGEVQS 62
Query: 70 TRRAAAISFASLLLTGQFKDNVSLAD-------------NGFWIDGPLPEPIVINKIANE 116
+RRA A+ L TG F V LAD G + G L ++E
Sbjct: 63 SRRAVLSLVAAGLATGSFVQAV-LADAKSIKVGPPPPPSGGLRMSGTLN--------SDE 113
Query: 117 KTGTRSFLKKRLYMANIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMY 176
+ LK R ++ + + R K+ A +++ + L+++ YV+ LRL++ ++
Sbjct: 114 ARDLQLPLKDRFFLQPLSPTEAAQRAKESAKEIVGVKKLIEKKAWPYVQNDLRLRAEYLR 173
Query: 177 HDFDKVISATPVDEKQQLTDMANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKEVMD 236
D + VI+ P DEK+ L ++ KLF + L+ A++ K+ E + Y + L +V+
Sbjct: 174 FDLNTVIAGKPKDEKKSLKELTGKLFQDISNLDHAAKIKSSPEAEKYYAATVSSLNDVLA 233
Query: 237 RM 238
++
Sbjct: 234 KL 235
>Glyma07g14340.2
Length = 234
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 14/232 (6%)
Query: 19 TMAPLTNLHGVSK-------NLTPITCLPNVHRTLRRGHV--VGFLGRKSQEFSECSVQS 69
MA + L G S+ ++ T L NV R V GF R Q+ VQS
Sbjct: 4 AMASMAGLRGSSQAVLEGSLQVSGSTRL-NVGSGSRVASVTRAGFTVRAQQQQVSGEVQS 62
Query: 70 TRRAAAISFASLLLTGQFKDNVSLAD-NGFWIDGPLPEPIVINKIAN--EKTGTRSFLKK 126
+RRA A+ L TG F V LAD + P P + N E + LK
Sbjct: 63 SRRAVLSLVAAGLATGSFVQAV-LADAKSIKVGPPPPPSGGLPGTLNSDEARDLQLPLKD 121
Query: 127 RLYMANIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHDFDKVISAT 186
R ++ + + R K+ A +++ + L+++ YV+ LRL++ ++ D + VI+
Sbjct: 122 RFFLQPLSPTEAAQRAKESAKEIVGVKKLIEKKAWPYVQNDLRLRAEYLRFDLNTVIAGK 181
Query: 187 PVDEKQQLTDMANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKEVMDRM 238
P DEK+ L ++ KLF + L+ A++ K+ E + Y + L +V+ ++
Sbjct: 182 PKDEKKSLKELTGKLFQDISNLDHAAKIKSSPEAEKYYAATVSSLNDVLAKL 233
>Glyma18g05320.1
Length = 200
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 60/107 (56%)
Query: 132 NIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHDFDKVISATPVDEK 191
++ V+ ++ ++ +A DLL + DL++ ++ ++ LR S + D +I + P E+
Sbjct: 93 DMTVEDALSGVRGHAQDLLHVRDLLELESWRAAQKTLRQSSAILKKDIYTIIQSKPGIER 152
Query: 192 QQLTDMANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKEVMDRM 238
QL + + LF+N +L+ A+R K+ + CY+ + + +++ R+
Sbjct: 153 AQLRKLYSTLFNNVTRLDYAARDKDGPQVWQCYENIVVAVNDILSRI 199
>Glyma11g31950.2
Length = 189
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 60/107 (56%)
Query: 132 NIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHDFDKVISATPVDEK 191
++ V+ ++ ++ +A DLL + DL++ ++ ++ LR S + D +I + P E+
Sbjct: 83 DMTVEEALSGVRGHAQDLLHVRDLLELESWRAAQKTLRQSSAILKKDIYIIIQSKPGIER 142
Query: 192 QQLTDMANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKEVMDRM 238
QL + + LF+N +L+ A+R K+ + CY+ + + +++ R+
Sbjct: 143 AQLRKLYSTLFNNVTRLDYAARDKDGPQVWQCYKNIVVAVNDILSRI 189
>Glyma01g06110.1
Length = 192
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 119 GTRSFLKKRLYMANIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHD 178
GT SF+K+ + + + +V RIK+ A L ++ + ++ + Y+ Y+R+K ++ D
Sbjct: 72 GTHSFIKEHFFEPGLSPEDAVARIKQTAEGLHSIREALETMSWRYIMFYIRIKQAYLDQD 131
Query: 179 FDKVISATPVDEKQQLTDMANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKEVMDRM 238
+ P +++ AN+L NF + + R + E+ Y+++ LK + D++
Sbjct: 132 LRTAFTTLPESRRKEYVKTANELVSNFGEFDRHIRTPKVYESYLYYEKT---LKSI-DQL 187
Query: 239 TAM 241
A+
Sbjct: 188 VAI 190