Miyakogusa Predicted Gene

Lj3g3v1541430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1541430.1 Non Chatacterized Hit- tr|F6I1L4|F6I1L4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,65.62,2e-18,seg,NULL; PRE-MRNA CLEAVAGE COMPLEX
II,NULL,NODE_22172_length_1694_cov_64.429161.path2.1
         (538 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g39710.1                                                       320   2e-87
Glyma20g28050.1                                                       319   4e-87
Glyma20g28040.1                                                       202   8e-52

>Glyma10g39710.1 
          Length = 837

 Score =  320 bits (821), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 181/295 (61%), Positives = 196/295 (66%), Gaps = 41/295 (13%)

Query: 2   PLSTYADEYPADNSTGRTIERESPHHAVDYGVVKTLGREEELSEWQRKQFSGDSRKRFQT 61
           PLS   DEY  DN              VDYGV K LGR+ +L+EWQRK            
Sbjct: 294 PLSASIDEYAVDNP------------GVDYGVAKALGRDVDLTEWQRKL----------- 330

Query: 62  MTYSLSNGQQRQSPRALIDAYGSDKSQETSSSKPFLVKRLGRNGIDKVSTTSWQNTEEEE 121
               LSNG QRQS RALIDAYGSDKSQETSSSK  LV+RL RNGIDKV +TSWQNTEEEE
Sbjct: 331 ----LSNGHQRQSSRALIDAYGSDKSQETSSSKSLLVERLDRNGIDKVLSTSWQNTEEEE 386

Query: 122 FDWEDMSPTLVEHNRNNGFLQSTTGFTTEMPVTVAANAISSEQDTRTGWSSGSQLLPVDD 181
           FDWE+MSPTL++H+RNN  L ST GF+ E P  VAANA  SEQDTR GWSSGSQL PVDD
Sbjct: 387 FDWENMSPTLIDHSRNNSLLPSTFGFSRERP-GVAANATLSEQDTRKGWSSGSQLPPVDD 445

Query: 182 SSVIAEDVFASSAYSRVPLGQVSGFQNPINQSLGSGQRNDAWKISSHPSNSTRHPFNVMG 241
           SS IAED FASS + R P GQV G QN IN SLGS Q +DAWKIS HPSN     F+  G
Sbjct: 446 SSAIAEDAFASSTFCRAPPGQVPGSQNQINHSLGSSQPHDAWKISHHPSNI----FSNRG 501

Query: 242 GGRNLLMPPIDNIPNTDVNSYGARLAASRMLPGLKSNVEGGPPPVLPATFEMRPS 296
             RNL++PPIDNI NTD N Y  R A SRM            P VLPA FEMRPS
Sbjct: 502 RARNLMIPPIDNIRNTDNNPYWVRPAVSRM---------EAHPSVLPAPFEMRPS 547



 Score =  139 bits (351), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 81/119 (68%), Gaps = 4/119 (3%)

Query: 424 QNMVNNSLHFLGGXXXXXXXXXXXXXXXXX----XXXXVSSQRPTVPYSNLFSSLVAQGV 479
           Q++ NN LH  GG                         + SQ+PTV Y+NL SSL++QGV
Sbjct: 571 QSISNNPLHLQGGAHPPLPPGRPPAPSQMIPHPNAGAFMPSQQPTVGYTNLISSLMSQGV 630

Query: 480 ISFPNQAPAQDSVGIEFNLDILKVRHESAISALYGDLPRQCTTCGLRFKCQDEHSNHMD 538
           IS  NQ PAQDSVG EFN DILK+RHESA++ALYGDLPRQCTTC LRFKCQ+EHS+HMD
Sbjct: 631 ISLANQLPAQDSVGTEFNPDILKIRHESAVNALYGDLPRQCTTCALRFKCQEEHSSHMD 689


>Glyma20g28050.1 
          Length = 837

 Score =  319 bits (818), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 184/327 (56%), Positives = 201/327 (61%), Gaps = 69/327 (21%)

Query: 2   PLSTYADEYPADNSTGRTIERESPHHAVDYGVVKTLGREEELSEWQRKQFSGDSRKRFQT 61
           PLS   DEY  DNS  R IER SPH AVDYGV K LGR+ +L+EWQ+K            
Sbjct: 260 PLSASMDEYAVDNSAVRLIERNSPHPAVDYGVAKALGRDVDLTEWQQKH----------- 308

Query: 62  MTYSLSNGQQRQSPRALIDAYGSDKSQETSSSKPFLVKRLGRNGIDKVSTTSWQNTEEEE 121
               LSNG QRQSPRALIDAYGSDKSQETSSSKP LV+RL RNGIDKV +TSWQNTEEEE
Sbjct: 309 ----LSNGHQRQSPRALIDAYGSDKSQETSSSKPLLVERLDRNGIDKVLSTSWQNTEEEE 364

Query: 122 FDWEDMSPTLVEHNRNNGFLQSTTGFTTEMPVTVAANAISSEQDTRTGWSSGSQLLPVDD 181
           FDWE+MSPTL +H+RNN  L ST GF+ E P            DTR GWSSGSQL PVDD
Sbjct: 365 FDWENMSPTLTDHSRNNSLLPSTFGFSRERP------------DTRKGWSSGSQLPPVDD 412

Query: 182 SSVIAEDVFASSA-----------------------------YSRVPLGQVSGFQNPINQ 212
           SS IAED FASS                              + R P GQV G QN IN 
Sbjct: 413 SSAIAEDAFASSTGLDSFVWVGLIRCMKFVHTCLAIGLFSNLFRRTPPGQVPGSQNQINH 472

Query: 213 SLGSGQRNDAWKISSHPSNSTRHPFNVMGGGRNLLMPPIDNIPNTDVNSYGARLAASRML 272
           SLGS Q +DAWKIS HPSN     F+  G  RNL++PP+DNI NTD N Y  R + SRM 
Sbjct: 473 SLGSSQPHDAWKISHHPSNI----FSNRGRARNLMIPPMDNIRNTDNNPYWVRPSMSRM- 527

Query: 273 PGLKSNVEGGPPPVLPATFEMRPSVNV 299
                      P VLPA FEMRPSVNV
Sbjct: 528 --------EARPSVLPAPFEMRPSVNV 546



 Score =  160 bits (405), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 95/136 (69%), Gaps = 4/136 (2%)

Query: 407 NTHLSNAPPNMPFPLPGQNMVNNSLHFLGGXXXXXXXXXXXXXXXXXXXXXV----SSQR 462
           +T +SN  P +PFPLP Q++ NN LH  GG                     V    SSQ+
Sbjct: 554 STAMSNPLPVIPFPLPFQSIANNPLHLQGGAHPSLPPGRPPAPSQMIPHPNVGAYMSSQQ 613

Query: 463 PTVPYSNLFSSLVAQGVISFPNQAPAQDSVGIEFNLDILKVRHESAISALYGDLPRQCTT 522
           PTV Y+NL SSL++QGVIS  NQ PAQDSVG EFN DILKVRHESA++ALYGDLPRQCTT
Sbjct: 614 PTVGYTNLISSLMSQGVISLANQLPAQDSVGTEFNPDILKVRHESAVNALYGDLPRQCTT 673

Query: 523 CGLRFKCQDEHSNHMD 538
           CGLRFKCQ+EHS+HMD
Sbjct: 674 CGLRFKCQEEHSSHMD 689


>Glyma20g28040.1 
          Length = 227

 Score =  202 bits (514), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 141/293 (48%), Positives = 162/293 (55%), Gaps = 82/293 (27%)

Query: 18  RTIERESPHHAVDYGVVKTLGREEELSEWQRKQFSGDSRKRFQTMTYSLSNGQQRQSPRA 77
           R  ER+S H AVDYGV K L R+ E                              QSPRA
Sbjct: 9   RLFERDSLHPAVDYGVAKALVRQVE-----------------------------HQSPRA 39

Query: 78  LIDAYGSDKSQETSSSKPFLVKRLGRNGID-KVSTTSWQNTEEEEFDWEDMSPTLVEHNR 136
           LIDAYGSDKSQ++SSSKP LV+ L  NGID KV +TSWQNTEEEEFDWEDMSPTL     
Sbjct: 40  LIDAYGSDKSQQSSSSKPLLVEPLDINGIDNKVLSTSWQNTEEEEFDWEDMSPTL----- 94

Query: 137 NNGFLQSTTGFTTEMPVTVAANAISSEQDTRTGWSSGSQLLPVDDSSVIAEDVFASSAYS 196
                 STTGF+ E PV VAANA  S QD R GW        + D             + 
Sbjct: 95  ----RSSTTGFSRERPV-VAANATLSGQDARKGWC-------IRD-------------FH 129

Query: 197 RVPLGQVSGFQNPINQSLGSGQRNDAWKISSHPSNSTRHPFNVMGGGRNLLMPPIDNIPN 256
           R PLGQV  FQN IN SLGS Q +DAWKI  H SNS +H F+  G  R+L++PPIDNI N
Sbjct: 130 RAPLGQVPRFQNLINDSLGSSQPHDAWKIIHHASNSPQHIFSNRGPARSLMIPPIDNIRN 189

Query: 257 TDVNSYGARLAASRMLPGLKSNVEGGPPPVLPATFEMRPSVNVHAARPPSLNP 309
           TD+N Y                       V PA+FE+RPS N++  RPP+LNP
Sbjct: 190 TDINPYQ----------------------VPPASFEIRPSTNLNVTRPPTLNP 220