Miyakogusa Predicted Gene

Lj3g3v1461480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1461480.1 tr|A9SXN2|A9SXN2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_85367
,36.54,0.000000000000002,EF-hand,NULL; EF_HAND_2,EF-HAND 2;
UIM,Ubiquitin interacting motif; no description,EF-hand-like
doma,CUFF.42646.1
         (291 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g03790.1                                                       236   3e-62

>Glyma03g03790.1 
          Length = 292

 Score =  236 bits (601), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 143/270 (52%), Positives = 162/270 (60%), Gaps = 6/270 (2%)

Query: 24  AETV-GNGKPQQPIMSEYEQQRLHRIAENRARLEALGLPQMASSLKGLPRTRSKTKGKEK 82
           A+TV GNG  ++  +SEYE+QR+ RIAENRARLEALGLPQ+ASSLKG  +    TKGKEK
Sbjct: 22  AQTVEGNGVKKKKGLSEYEKQRMSRIAENRARLEALGLPQIASSLKGSSQPHKATKGKEK 81

Query: 83  VADDDKEYQXXXXXXXXXXXXXXXXXXXXXXX-----FAPQNASGSRKRKVMNKSLXXXX 137
                 +                              FA +NASGSRKRKV  KSL    
Sbjct: 82  KKKVKDDDDEEYEPEEDEGEQVSGSSSEENEDRKDEDFAIENASGSRKRKVKIKSLKKKA 141

Query: 138 XXXXXXXXXXXECIXXXXXXALRQAIALSLQDSAEXXXXXXXXXXXXXXXXXXENLHIQE 197
                      E I      ALRQAIALSLQDSAE                   + H+QE
Sbjct: 142 RVSGKKHASNSEYIDYDDDEALRQAIALSLQDSAEGSYLPDKNVVNTSKTEKKGSGHVQE 201

Query: 198 DXXXXXXXXSFTSRLQMTEDELIVHFFQLDEAGKGCLGIRDIERAATAHDFMWSDKELAD 257
           D        SF SRLQ+TEDELIVHFFQLDEAGKG + +RDI+RAATAHDF+W+DKEL D
Sbjct: 202 DKGRKKNKKSFASRLQLTEDELIVHFFQLDEAGKGTISVRDIQRAATAHDFLWTDKELVD 261

Query: 258 MIRCFDSDGDRKLSLDDFRKIAVRCNMIKG 287
           MIR FDSDGD KLSLDDFRKI VRCN+IKG
Sbjct: 262 MIRYFDSDGDGKLSLDDFRKIVVRCNLIKG 291