Miyakogusa Predicted Gene

Lj3g3v1440180.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1440180.3 Non Chatacterized Hit- tr|G7IJ51|G7IJ51_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,53.06,3e-17,Likely ribonuclease with RNase H
fold.,YqgF/RNase H-like domain; RNAse_H_YqgF: RNAse H domain
protei,CUFF.42649.3
         (237 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g03920.1                                                       257   1e-68
Glyma01g33030.1                                                        87   2e-17

>Glyma03g03920.1 
          Length = 162

 Score =  257 bits (656), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/167 (74%), Positives = 142/167 (85%), Gaps = 10/167 (5%)

Query: 11  PPHNLFLCCSAPSVPKKPSFVKLCPTQNAKNHYNRVKAISLDELPPNALRRKSDPQWRGG 70
           PPH  FL CS    P  PSFV      N KN Y RVKA++LDELPPNALR+K +PQWRGG
Sbjct: 6   PPHKPFLRCS----PSNPSFV------NGKNGYCRVKALTLDELPPNALRKKREPQWRGG 55

Query: 71  FTLGVDLGMARTGIAISKGFNFRPVTVLELRGQKLEVQMINIAEQEEADEFVIGLPRSFD 130
           F+LG+DLG+ARTG+A+SKGF+ RP+TVLELRGQKLEVQ+INIAE+EE DEF+IGLP+S D
Sbjct: 56  FSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEEEEVDEFIIGLPKSSD 115

Query: 131 GKETPQSNIVRTVAGRLAIRAAERGWRVYLQDEHGTTTEAVDRMVNM 177
           GKETPQSN VR+VAGRLA+RAAERGWRVYLQDEHGTT EA DRM+NM
Sbjct: 116 GKETPQSNKVRSVAGRLAVRAAERGWRVYLQDEHGTTEEAKDRMINM 162


>Glyma01g33030.1 
          Length = 71

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 47/53 (88%)

Query: 46 VKAISLDELPPNALRRKSDPQWRGGFTLGVDLGMARTGIAISKGFNFRPVTVL 98
          VKA++LDELPPNALR+K  PQWRGGF+ G+DLG+AR G+A+SKGF  RP+TVL
Sbjct: 19 VKALTLDELPPNALRKKRQPQWRGGFSRGLDLGLARIGLALSKGFFIRPLTVL 71