Miyakogusa Predicted Gene

Lj3g3v1428130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1428130.1 tr|A9SYE5|A9SYE5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_231705,34.07,2e-16,coiled-coil,NULL,CUFF.42635.1
         (173 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g17030.1                                                       210   7e-55
Glyma11g17030.2                                                       177   4e-45
Glyma20g03010.1                                                        79   2e-15
Glyma07g35150.1                                                        71   6e-13

>Glyma11g17030.1 
          Length = 174

 Score =  210 bits (534), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 106/171 (61%), Positives = 131/171 (76%), Gaps = 9/171 (5%)

Query: 1   MATVVESSESDTPPPAPGNHSTTSNRPTLDPTTPFIDYAVGQALLYQKAFNDAVESAIDA 60
           MA V ES ESD+      N S T+N  TL+ T PF+DYA+ QA LY KAFNDAV+S ID 
Sbjct: 1   MAMVAESPESDSD----NNSSKTNNPQTLNETAPFLDYALAQAQLYHKAFNDAVDSTIDT 56

Query: 61  SKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVITCGAAA 120
           +KSRFSQIRSTSSAHF QTL +LDD KSQY AYE LLFGKIKEGV+VA+SHPVITCGA A
Sbjct: 57  AKSRFSQIRSTSSAHFHQTLDSLDDLKSQYTAYEGLLFGKIKEGVVVAASHPVITCGATA 116

Query: 121 ATGLMVFKRPRRILYYNTMRLFLNEETLIS-----RASAEVKELRKSIDLL 166
           + GL+V KRPRR+LYYNT+RLF++EE  ++     ++ A +++ R++I  L
Sbjct: 117 SLGLLVLKRPRRVLYYNTLRLFVSEEVSMTSLSQDKSHALLEKYRRNIICL 167


>Glyma11g17030.2 
          Length = 144

 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 104/142 (73%), Gaps = 4/142 (2%)

Query: 1   MATVVESSESDTPPPAPGNHSTTSNRPTLDPTTPFIDYAVGQALLYQKAFNDAVESAIDA 60
           MA V ES ESD+      N S T+N  TL+ T PF+DYA+ QA LY KAFNDAV+S ID 
Sbjct: 1   MAMVAESPESDSD----NNSSKTNNPQTLNETAPFLDYALAQAQLYHKAFNDAVDSTIDT 56

Query: 61  SKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVITCGAAA 120
           +KSRFSQIRSTSSAHF QTL +LDD KSQY AYE LLFGKIKEGV+VA+SHPVITCGA A
Sbjct: 57  AKSRFSQIRSTSSAHFHQTLDSLDDLKSQYTAYEGLLFGKIKEGVVVAASHPVITCGATA 116

Query: 121 ATGLMVFKRPRRILYYNTMRLF 142
           + GL+V K   R      + +F
Sbjct: 117 SLGLLVLKSEIRCFLLCCVLIF 138


>Glyma20g03010.1 
          Length = 230

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 4/118 (3%)

Query: 56  SAIDASKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVIT 115
           SAI ++++    ++ +SS HF+     L +  SQY  YED    K+K+G+++A  +P ++
Sbjct: 28  SAIQSART----VQHSSSTHFRAFQNFLPEAVSQYRTYEDAFVNKVKDGLMIAKENPAVS 83

Query: 116 CGAAAATGLMVFKRPRRILYYNTMRLFLNEETLISRASAEVKELRKSIDLLKAEGEKW 173
            G A +  L+  + PRR L+ +T+  F +EE   +R    VK+L  S+DLLK E  K 
Sbjct: 84  AGVAISAALLAMRAPRRFLFRHTLGRFQSEEARYARIEKNVKDLNLSVDLLKKENAKL 141


>Glyma07g35150.1 
          Length = 231

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 4/118 (3%)

Query: 56  SAIDASKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVIT 115
           SAI ++++    ++ ++  HF+     L +   QY  YED    K+K+G+++A  +P ++
Sbjct: 29  SAIQSART----VQHSTINHFRAFQNFLPEAVPQYRTYEDAFVNKVKDGLMIAKENPALS 84

Query: 116 CGAAAATGLMVFKRPRRILYYNTMRLFLNEETLISRASAEVKELRKSIDLLKAEGEKW 173
            G A +  L+  + PRR L+ +T+  F +EE   +R    VK+L  S+DLLK E  K 
Sbjct: 85  AGLAVSGALLAMRAPRRFLFRHTLGRFQSEEVRYARTEKNVKDLGLSVDLLKKESVKL 142