Miyakogusa Predicted Gene

Lj3g3v1425010.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1425010.3 tr|G7LDZ6|G7LDZ6_MEDTR F-box/FBD/LRR-repeat
protein OS=Medicago truncatula GN=MTR_8g077460 PE=4
SV=1,39.46,1e-17,FBD,FBD; domain in FBox and BRCT domain containing
pl,FBD,CUFF.42627.3
         (164 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g35370.1                                                        76   1e-14
Glyma08g46590.2                                                        54   5e-08
Glyma18g35320.1                                                        49   2e-06

>Glyma18g35370.1 
          Length = 409

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 5   LLHALSGVKHLVLGCSTTKNMIRAPTLDIPKFRYLHELELVLPHFNMSFVVKILEKCHML 64
           +  ALS V+ L L  ST   +  A T DIP F  L +LE+   +++   +  +L++ H L
Sbjct: 251 IFRALSNVRCLSLSTSTVACLKHASTSDIPVFDKLIQLEISFGNYSWDLLASLLQRSHKL 310

Query: 65  RLLTIENNNEPSKW--GKPPRA--PIF--HHVLHLTFIHYKGYQGFTDELEFLAYVLREG 118
            +LTI    EP K+  G+ PR   P+     +LHL     + YQG   EL+F+ Y+++  
Sbjct: 311 EVLTI--YKEPQKYAKGQEPRWIHPLLVPECLLHLKTFCLREYQGLETELDFVGYIMQNA 368

Query: 119 IVLERMIISTDRFLDIQQKNKVLKNLLALPRCSSMCEIKF 158
            VLE M I     L  ++K ++ ++L  L R    C+I F
Sbjct: 369 RVLETMTIYISSSLGSEEKLQIRRHLSILQRNFETCQIVF 408


>Glyma08g46590.2 
          Length = 380

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 20/172 (11%)

Query: 4   KLLHALSGVKHLVLGCSTTKNMIRAPTLD-------IPKFRYLHELELVLPHFNMSFV-- 54
           KLL A     H+ L        +R   ++       IP+F+ L  LEL        +V  
Sbjct: 208 KLLRATIAFGHVPLEVVNNVQFLRIDWMEHKEEANLIPEFQNLTHLELGYSECTRDWVDV 267

Query: 55  VKILEKCHMLRLLTIE--------NNNEPSKWGKPPRAPIFHHVLHLTFIHYKGYQGFTD 106
           ++++++C  L++L I+         ++E + W  P   P     LHL     + Y G   
Sbjct: 268 LEVIQRCPNLQILDIDMGSIDMTTRDDEGADWPFPRSVPS-SISLHLKTCFIRCYGGSKG 326

Query: 107 ELEFLAYVLREGIVLERMIISTDRFLDIQQKNKVLKNLLALPRCSSMCEIKF 158
           EL F  Y++R    L  M IST  +   QQK  +LK L   PR S +C++ F
Sbjct: 327 ELRFARYIMRNARHLRTMKIST--YASRQQKFNMLKKLSLCPRRSRICKLSF 376


>Glyma18g35320.1 
          Length = 345

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 53  FVVKILEKCHMLRLLTIENNNEP--SKWGKPPRAPIFHHVLHLTFIHYKGYQGFTDELEF 110
           FV+ ++++C  L++LTI   +    ++   P   PI     HL     K Y G  DE  F
Sbjct: 238 FVLDLIKRCPKLQILTIYKVDSALFAEGDYPQSVPICIS-FHLKICTLKRYNGSKDEFRF 296

Query: 111 LAYVLREGIVLERMIISTDRFLDIQQKNKVLKNLLALPRCSSMCEIKFD 159
           + Y++     L+ M IS +  ++ ++K ++ + L    RCS+ C++ F+
Sbjct: 297 VTYIMENSKYLQIMTISCNSDINKERKLEMFQKLSLCTRCSTSCKLLFE 345