Miyakogusa Predicted Gene

Lj3g3v1411740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1411740.1 tr|Q6JAD5|Q6JAD5_MAIZE TATA sequence-binding
protein 1 (TBP-1) OS=Zea mays GN=Z477F24.5 PE=3
SV=1,31.96,0.0000000009,TATA-box binding protein-like,NULL; no
description,Beta2-adaptin/TBP, C-terminal domain;
TATA_bind_p,CUFF.42607.1
         (200 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g25450.4                                                       407   e-114
Glyma16g25450.3                                                       407   e-114
Glyma16g25450.1                                                       407   e-114
Glyma03g04500.2                                                       407   e-114
Glyma03g04500.1                                                       407   e-114
Glyma09g41330.1                                                       400   e-112
Glyma19g28780.1                                                       397   e-111
Glyma18g44460.1                                                       394   e-110
Glyma09g41330.2                                                       363   e-101
Glyma16g25450.2                                                       358   2e-99
Glyma19g25220.1                                                       116   2e-26
Glyma02g06370.1                                                       107   8e-24

>Glyma16g25450.4 
          Length = 201

 Score =  407 bits (1045), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/200 (99%), Positives = 199/200 (99%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV
Sbjct: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIR+PKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVG
Sbjct: 61  IMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG 120

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180
           SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE
Sbjct: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180

Query: 181 TYTAFENIYPVLTEFRKNQQ 200
           TYTAFENIYPVLTEFRKNQQ
Sbjct: 181 TYTAFENIYPVLTEFRKNQQ 200


>Glyma16g25450.3 
          Length = 201

 Score =  407 bits (1045), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/200 (99%), Positives = 199/200 (99%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV
Sbjct: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIR+PKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVG
Sbjct: 61  IMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG 120

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180
           SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE
Sbjct: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180

Query: 181 TYTAFENIYPVLTEFRKNQQ 200
           TYTAFENIYPVLTEFRKNQQ
Sbjct: 181 TYTAFENIYPVLTEFRKNQQ 200


>Glyma16g25450.1 
          Length = 201

 Score =  407 bits (1045), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/200 (99%), Positives = 199/200 (99%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV
Sbjct: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIR+PKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVG
Sbjct: 61  IMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG 120

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180
           SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE
Sbjct: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180

Query: 181 TYTAFENIYPVLTEFRKNQQ 200
           TYTAFENIYPVLTEFRKNQQ
Sbjct: 181 TYTAFENIYPVLTEFRKNQQ 200


>Glyma03g04500.2 
          Length = 201

 Score =  407 bits (1045), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/200 (99%), Positives = 199/200 (99%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV
Sbjct: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIR+PKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVG
Sbjct: 61  IMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG 120

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180
           SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE
Sbjct: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180

Query: 181 TYTAFENIYPVLTEFRKNQQ 200
           TYTAFENIYPVLTEFRKNQQ
Sbjct: 181 TYTAFENIYPVLTEFRKNQQ 200


>Glyma03g04500.1 
          Length = 201

 Score =  407 bits (1045), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/200 (99%), Positives = 199/200 (99%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV
Sbjct: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIR+PKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVG
Sbjct: 61  IMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG 120

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180
           SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE
Sbjct: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180

Query: 181 TYTAFENIYPVLTEFRKNQQ 200
           TYTAFENIYPVLTEFRKNQQ
Sbjct: 181 TYTAFENIYPVLTEFRKNQQ 200


>Glyma09g41330.1 
          Length = 201

 Score =  400 bits (1027), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/200 (97%), Positives = 197/200 (98%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           MA+Q LEGSQPVDL KHPSGIVPTLQNIVSTVNLDCKL+LK+IALQARNAEYNPKRFAAV
Sbjct: 1   MAEQALEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVG
Sbjct: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG 120

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180
           SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE
Sbjct: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180

Query: 181 TYTAFENIYPVLTEFRKNQQ 200
           TYTAFENIYPVLTEFRKNQQ
Sbjct: 181 TYTAFENIYPVLTEFRKNQQ 200


>Glyma19g28780.1 
          Length = 201

 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/200 (96%), Positives = 196/200 (98%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           MA+Q LEGSQPVDL KHPSGIVPTLQNIVSTVNLDCKL+LK+IALQARNAEYNPKRFAAV
Sbjct: 1   MAEQALEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVG
Sbjct: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG 120

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180
           SCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE
Sbjct: 121 SCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180

Query: 181 TYTAFENIYPVLTEFRKNQQ 200
           TYTAFENIYPVLTEFRKNQQ
Sbjct: 181 TYTAFENIYPVLTEFRKNQQ 200


>Glyma18g44460.1 
          Length = 200

 Score =  394 bits (1013), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/200 (95%), Positives = 196/200 (98%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           MA+Q LEGSQPVDL KHPSGIVPTL+NIVSTV+LDCKL+LK+IALQARNAEYNPKRFAAV
Sbjct: 1   MAEQALEGSQPVDLTKHPSGIVPTLRNIVSTVSLDCKLELKSIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVG
Sbjct: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG 120

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180
           SCDVKFPIRLEGLAYSHGAFS YEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE
Sbjct: 121 SCDVKFPIRLEGLAYSHGAFSRYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180

Query: 181 TYTAFENIYPVLTEFRKNQQ 200
           TYTAFENIYPVLTEFRKNQQ
Sbjct: 181 TYTAFENIYPVLTEFRKNQQ 200


>Glyma09g41330.2 
          Length = 186

 Score =  363 bits (932), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/200 (90%), Positives = 183/200 (91%), Gaps = 15/200 (7%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           MA+Q LEGSQPVDL KHPSGIVPTLQNIVSTVNLDCKL+LK+IALQARNAEYNPKRFAAV
Sbjct: 1   MAEQALEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARK               DFKIQNIVG
Sbjct: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARK---------------DFKIQNIVG 105

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180
           SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE
Sbjct: 106 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 165

Query: 181 TYTAFENIYPVLTEFRKNQQ 200
           TYTAFENIYPVLTEFRKNQQ
Sbjct: 166 TYTAFENIYPVLTEFRKNQQ 185


>Glyma16g25450.2 
          Length = 197

 Score =  358 bits (919), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 174/177 (98%), Positives = 176/177 (99%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV
Sbjct: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIR+PKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVG
Sbjct: 61  IMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG 120

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKV 177
           SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK+
Sbjct: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKI 177



 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 25  LQNIVSTVNLDCKLDLKTIAL-QARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTG 83
           +QNIV + ++   + L+ +A      + Y P+ F  +I R+++PK   LIF SGK+V TG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 84  AKSEQQSKLAARKYARIIQKLGFNAKF 110
           AK   Q     R  A + Q+  +N K+
Sbjct: 175 AKIVIQE----RAGAVVWQRSSWNCKY 197


>Glyma19g25220.1 
          Length = 113

 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 67/86 (77%), Gaps = 5/86 (5%)

Query: 100 IIQKLGFNAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPK 159
           II+K+       DFKIQNIVGSCDVKFPIR+EGLAY  GAFSS    LFPGLIY MKQPK
Sbjct: 11  IIKKINLFLSLIDFKIQNIVGSCDVKFPIRMEGLAYYQGAFSS----LFPGLIYHMKQPK 66

Query: 160 IVLLIFVSGKIVLTGAKVRDET-YTA 184
           IVLLIFVSGKIVLT AK  D + YTA
Sbjct: 67  IVLLIFVSGKIVLTRAKYVDPSFYTA 92


>Glyma02g06370.1 
          Length = 107

 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 58/74 (78%), Gaps = 15/74 (20%)

Query: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFK 114
           +RFAAVIMRIR+PKTTALIFASGKMVCTGAKSEQQSKLAAR               KDFK
Sbjct: 27  QRFAAVIMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAAR---------------KDFK 71

Query: 115 IQNIVGSCDVKFPI 128
           IQ IVGSCDVKFPI
Sbjct: 72  IQIIVGSCDVKFPI 85