Miyakogusa Predicted Gene

Lj3g3v1410710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1410710.1 tr|D9ZJB3|D9ZJB3_MALDO SCL domain class
transcription factor OS=Malus domestica GN=SCL23 PE=2 SV=1,75,0.0002,
,CUFF.42601.1
         (94 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g10220.1                                                        50   8e-07
Glyma12g02530.1                                                        49   9e-07
Glyma10g22830.1                                                        49   1e-06

>Glyma11g10220.1 
          Length = 442

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 27/32 (84%), Gaps = 2/32 (6%)

Query: 1   MQELQWPPPGLFHILASRARKIRSLRITEFGC 32
           MQ LQWP  GLFHILASR++KIRS+RIT FG 
Sbjct: 190 MQGLQWP--GLFHILASRSKKIRSVRITGFGS 219


>Glyma12g02530.1 
          Length = 445

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 27/31 (87%), Gaps = 2/31 (6%)

Query: 1   MQELQWPPPGLFHILASRARKIRSLRITEFG 31
           MQ LQWP  GLFHILASR++KIRS+RIT FG
Sbjct: 190 MQGLQWP--GLFHILASRSKKIRSVRITGFG 218


>Glyma10g22830.1 
          Length = 166

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 27/31 (87%), Gaps = 2/31 (6%)

Query: 1   MQELQWPPPGLFHILASRARKIRSLRITEFG 31
           MQ LQWP  GLFHILASR++KIRS++IT FG
Sbjct: 101 MQGLQWP--GLFHILASRSKKIRSVKITGFG 129