Miyakogusa Predicted Gene

Lj3g3v1381530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1381530.1 tr|Q6YYA7|Q6YYA7_ORYSJ Os08g0359600 protein
OS=Oryza sativa subsp. japonica GN=OJ1014_E02.5 PE=3
SV=,77.19,3e-19,40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER,Ribosomal
protein S17; seg,NULL; Nucleic acid-binding protei,CUFF.42516.1
         (158 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g19190.1                                                       116   1e-26
Glyma18g43720.1                                                       112   2e-25
Glyma01g31470.2                                                       109   1e-24
Glyma01g31470.1                                                       109   1e-24

>Glyma07g19190.1 
          Length = 101

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/64 (87%), Positives = 61/64 (95%), Gaps = 1/64 (1%)

Query: 95  FDHKVYNRYVKRTSKFMAHDENNLCNIGDRVRLNPSRPLSKNKCWVVAEILKKARIYVPP 154
           F HKVY+RYVKRTSKFMAHDENNLCNIGD+VRL+PSRPLSK+K WVVAEILKKA+IYVPP
Sbjct: 25  FYHKVYDRYVKRTSKFMAHDENNLCNIGDKVRLDPSRPLSKHKHWVVAEILKKAQIYVPP 84

Query: 155 TSTP 158
            STP
Sbjct: 85  -STP 87


>Glyma18g43720.1 
          Length = 121

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/64 (84%), Positives = 60/64 (93%), Gaps = 1/64 (1%)

Query: 95  FDHKVYNRYVKRTSKFMAHDENNLCNIGDRVRLNPSRPLSKNKCWVVAEILKKARIYVPP 154
           F HK+Y+RYVKRTSKFMAHDENNLCNIGD+VRL+PSRPLSK+K WVVAEILKKA+IYV P
Sbjct: 25  FYHKLYDRYVKRTSKFMAHDENNLCNIGDKVRLDPSRPLSKHKHWVVAEILKKAQIYV-P 83

Query: 155 TSTP 158
            STP
Sbjct: 84  LSTP 87


>Glyma01g31470.2 
          Length = 101

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 57/61 (93%)

Query: 95  FDHKVYNRYVKRTSKFMAHDENNLCNIGDRVRLNPSRPLSKNKCWVVAEILKKARIYVPP 154
           F HK+Y+RYVKRTSKFMAHDE+N CNIGDRVRL+PSRPLSK+K W VAEILKKARIYVPP
Sbjct: 25  FYHKLYDRYVKRTSKFMAHDEHNHCNIGDRVRLDPSRPLSKHKHWAVAEILKKARIYVPP 84

Query: 155 T 155
           +
Sbjct: 85  S 85


>Glyma01g31470.1 
          Length = 101

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 57/61 (93%)

Query: 95  FDHKVYNRYVKRTSKFMAHDENNLCNIGDRVRLNPSRPLSKNKCWVVAEILKKARIYVPP 154
           F HK+Y+RYVKRTSKFMAHDE+N CNIGDRVRL+PSRPLSK+K W VAEILKKARIYVPP
Sbjct: 25  FYHKLYDRYVKRTSKFMAHDEHNHCNIGDRVRLDPSRPLSKHKHWAVAEILKKARIYVPP 84

Query: 155 T 155
           +
Sbjct: 85  S 85