Miyakogusa Predicted Gene

Lj3g3v1296960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1296960.1 tr|G7IU49|G7IU49_MEDTR DDB1-and CUL4-associated
factor OS=Medicago truncatula GN=MTR_2g093200 PE=4 S,59.76,0,WD40
repeats,WD40 repeat; SUBFAMILY NOT NAMED,NULL; WD REPEAT
DOMAIN-CONTAINING FAMILY,NULL; seg,NUL,CUFF.42413.1
         (248 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g04960.1                                                       256   2e-68
Glyma13g40440.1                                                       251   4e-67
Glyma10g43020.1                                                       219   2e-57
Glyma10g43020.2                                                       219   2e-57
Glyma20g23960.1                                                       214   5e-56
Glyma06g09930.1                                                        61   1e-09
Glyma04g09890.3                                                        59   5e-09
Glyma04g09890.2                                                        59   5e-09
Glyma04g09890.1                                                        59   5e-09

>Glyma15g04960.1 
          Length = 469

 Score =  256 bits (653), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/251 (56%), Positives = 162/251 (64%), Gaps = 26/251 (10%)

Query: 1   MLGKHEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATKLFRCYSRISKKMYGPSI 60
           MLGKH G V+KL VEPGS H  YS GEDGF+QHFDLR++SATKLF C S I       S 
Sbjct: 126 MLGKHHGCVYKLAVEPGSAHIFYSSGEDGFIQHFDLRSNSATKLFCCSSSIGNNKQTLSK 185

Query: 61  IELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLALKSDRPLETYFCPHHLIGSYR 120
           + LNSI IDPRNP+Y A+GGS EYAR+YDIR+CQW   A  SDRP+ T FCP HLIGS  
Sbjct: 186 VGLNSIVIDPRNPYYFAIGGSDEYARVYDIRKCQWGS-ARNSDRPVNT-FCPCHLIGSNN 243

Query: 121 IHITGMAXXXXXXXXXXXXXXXXYLFERNAKLGSSPSSAKCHDDLDNVDAAWVYPRYRNK 180
           +HITG+A                YLFE+N    SSPSSA                     
Sbjct: 244 VHITGLAYSSFSELLVSYNDELIYLFEKNVHSDSSPSSAT-------------------- 283

Query: 181 GTDDLNHVGAAQVYEGHKNTGAIKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVRLMA 240
            ++D  ++  AQVY GH+N   IKGVNFFGPNDEY+MSGSDCGHIFIWKKK AKLVRLM 
Sbjct: 284 -SEDPKNIHEAQVYSGHRNAQTIKGVNFFGPNDEYIMSGSDCGHIFIWKKKEAKLVRLMV 342

Query: 241 DD---VNQLAS 248
            D   VNQL +
Sbjct: 343 GDQHVVNQLEA 353


>Glyma13g40440.1 
          Length = 488

 Score =  251 bits (642), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 140/248 (56%), Positives = 160/248 (64%), Gaps = 26/248 (10%)

Query: 1   MLGKHEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATKLFRCYSRISKKMYGPSI 60
           MLGKH G V+KL VEPGS H  YS GEDGF+QHFDLR++SATKLF C S I       S 
Sbjct: 145 MLGKHHGCVYKLAVEPGSAHIFYSSGEDGFIQHFDLRSNSATKLFCCSSSIGNNKQTLSK 204

Query: 61  IELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLALKSDRPLETYFCPHHLIGSYR 120
           + LNSI ID RNP+Y A+GGS EYAR+YD+R+CQW D A  SDRP+ T FCP HLIGS  
Sbjct: 205 VGLNSIVIDCRNPYYFAIGGSDEYARVYDMRKCQW-DSARNSDRPVNT-FCPRHLIGSNN 262

Query: 121 IHITGMAXXXXXXXXXXXXXXXXYLFERNAKLGSSPSSAKCHDDLDNVDAAWVYPRYRNK 180
           +HITG+A                YLFE+N    SSPSSA                     
Sbjct: 263 VHITGLAYSSFGELLVSYNDELIYLFEKNMHSDSSPSSAT-------------------- 302

Query: 181 GTDDLNHVGAAQVYEGHKNTGAIKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVRLMA 240
            ++D  ++  AQVY GH+N   IKGVNFFGPNDEYV+SGSDCGHIFIWKKK AKLVRLM 
Sbjct: 303 -SEDSKNIHEAQVYSGHRNAQTIKGVNFFGPNDEYVLSGSDCGHIFIWKKKEAKLVRLMV 361

Query: 241 DD---VNQ 245
            D   VNQ
Sbjct: 362 GDQHVVNQ 369


>Glyma10g43020.1 
          Length = 515

 Score =  219 bits (559), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/244 (47%), Positives = 150/244 (61%), Gaps = 7/244 (2%)

Query: 2   LGKHEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATKLFRCYSRISKKMYGPSII 61
           L KH+G   KL VEPGSPH  Y+CGEDG VQHFDLRT +AT+LF C     +  Y P +I
Sbjct: 158 LAKHQGRAHKLAVEPGSPHIFYTCGEDGLVQHFDLRTGAATELFTCQPIKDRWSYMP-VI 216

Query: 62  ELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLALKSDRPLETYFCPHHLIGSYRI 121
            LN+IAIDPRNP+  AV GS EYARLYDIRR +W D +    +P + +FCP HLIG  ++
Sbjct: 217 HLNAIAIDPRNPNLFAVAGSDEYARLYDIRRYKW-DGSTDFGQPTD-FFCPPHLIGDQQV 274

Query: 122 HITGMAXXXXXXXXXXXXXXXXYLFERNAKLGSSPSSAKCHDDLDNVDAAWV---YPRYR 178
            ITG+A                YLF ++  LG +P        + N DA+ +   +    
Sbjct: 275 GITGLAFSEQRELLVSYNDELIYLFTQDMGLGPNPPDPGSPKSM-NSDASEIGFSHGSVS 333

Query: 179 NKGTDDLNHVGAAQVYEGHKNTGAIKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVRL 238
           ++   D +     QV++GH+N   +KGVNFFGP  EYV+SGSDCG IFIWKKK  +L+R+
Sbjct: 334 SQSNMDADDKITPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGQLIRV 393

Query: 239 MADD 242
           M  D
Sbjct: 394 MEAD 397


>Glyma10g43020.2 
          Length = 497

 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/244 (47%), Positives = 150/244 (61%), Gaps = 7/244 (2%)

Query: 2   LGKHEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATKLFRCYSRISKKMYGPSII 61
           L KH+G   KL VEPGSPH  Y+CGEDG VQHFDLRT +AT+LF C     +  Y P +I
Sbjct: 140 LAKHQGRAHKLAVEPGSPHIFYTCGEDGLVQHFDLRTGAATELFTCQPIKDRWSYMP-VI 198

Query: 62  ELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLALKSDRPLETYFCPHHLIGSYRI 121
            LN+IAIDPRNP+  AV GS EYARLYDIRR +W D +    +P + +FCP HLIG  ++
Sbjct: 199 HLNAIAIDPRNPNLFAVAGSDEYARLYDIRRYKW-DGSTDFGQPTD-FFCPPHLIGDQQV 256

Query: 122 HITGMAXXXXXXXXXXXXXXXXYLFERNAKLGSSPSSAKCHDDLDNVDAAWV---YPRYR 178
            ITG+A                YLF ++  LG +P        + N DA+ +   +    
Sbjct: 257 GITGLAFSEQRELLVSYNDELIYLFTQDMGLGPNPPDPGSPKSM-NSDASEIGFSHGSVS 315

Query: 179 NKGTDDLNHVGAAQVYEGHKNTGAIKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVRL 238
           ++   D +     QV++GH+N   +KGVNFFGP  EYV+SGSDCG IFIWKKK  +L+R+
Sbjct: 316 SQSNMDADDKITPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGQLIRV 375

Query: 239 MADD 242
           M  D
Sbjct: 376 MEAD 379


>Glyma20g23960.1 
          Length = 489

 Score =  214 bits (546), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 113/244 (46%), Positives = 149/244 (61%), Gaps = 7/244 (2%)

Query: 2   LGKHEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATKLFRCYSRISKKMYGPSII 61
           L KH+G   KL +EPGSPH  Y+CGEDG VQ FDLRT +AT+LF C     +  Y P +I
Sbjct: 132 LAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQRFDLRTGAATELFTCQPIKDRWSYMP-VI 190

Query: 62  ELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLALKSDRPLETYFCPHHLIGSYRI 121
            LN+IAIDPRNP+  AV GS EYARLYDIR+ +W D +    +P   +FCP HLIG  ++
Sbjct: 191 HLNAIAIDPRNPNLFAVAGSDEYARLYDIRKYKW-DGSTDFGQP-TNFFCPPHLIGDQQV 248

Query: 122 HITGMAXXXXXXXXXXXXXXXXYLFERNAKLGSSPSSAKCHDDLDNVDAAWV---YPRYR 178
            ITG+A                YLF ++  LG +P        + N DA+ +   +    
Sbjct: 249 GITGLAFSELRELLVSYNDELIYLFTQDMGLGPNPPDPVSPKSM-NSDASEIGFSHGSVS 307

Query: 179 NKGTDDLNHVGAAQVYEGHKNTGAIKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVRL 238
           ++   D +     QV++GH+N   +KGVNFFGP  EYV+SGSDCG IFIWKKK+ +L+R+
Sbjct: 308 SQSKMDADEKVTPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKSGQLIRV 367

Query: 239 MADD 242
           M  D
Sbjct: 368 MEAD 371


>Glyma06g09930.1 
          Length = 715

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 62/142 (43%), Gaps = 26/142 (18%)

Query: 5   HEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATK------------LFRCYSRIS 52
           H   V KL VE G+P+ ++S  EDG ++  D R  ++              L    S   
Sbjct: 100 HTRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSK 159

Query: 53  KKMYGP--SIIELNSIAIDPRNPHYIAVGGSAEYARLYDIR------RCQWRDLALKSDR 104
           + +  P   ++ L S  I    PH + VGGS  +ARLYD R       CQ R     S  
Sbjct: 160 RSLADPPKQVLALKSCDISSTKPHLLLVGGSDAFARLYDRRMLPPLSSCQKR----MSPP 215

Query: 105 PLETYFCPHHLI--GSYRIHIT 124
           P   YFCP HL   G   +H+T
Sbjct: 216 PCVNYFCPMHLSDRGHPSLHLT 237


>Glyma04g09890.3 
          Length = 775

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 24/141 (17%)

Query: 5   HEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATK------------LFRCYSRIS 52
           H   V KL VE G+P+ ++S  EDG ++  D R  ++              L    S   
Sbjct: 147 HTRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSK 206

Query: 53  KKMYGP--SIIELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQ-----WRDLALKSDRP 105
           + +  P   ++ L S  I    PH + VGGS  +ARLYD R        W+ +   S  P
Sbjct: 207 RSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCWKRM---SPPP 263

Query: 106 LETYFCPHHLI--GSYRIHIT 124
              YFCP HL   G   +H+T
Sbjct: 264 CVNYFCPMHLSDHGHPSLHLT 284


>Glyma04g09890.2 
          Length = 775

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 24/141 (17%)

Query: 5   HEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATK------------LFRCYSRIS 52
           H   V KL VE G+P+ ++S  EDG ++  D R  ++              L    S   
Sbjct: 147 HTRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSK 206

Query: 53  KKMYGP--SIIELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQ-----WRDLALKSDRP 105
           + +  P   ++ L S  I    PH + VGGS  +ARLYD R        W+ +   S  P
Sbjct: 207 RSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCWKRM---SPPP 263

Query: 106 LETYFCPHHLI--GSYRIHIT 124
              YFCP HL   G   +H+T
Sbjct: 264 CVNYFCPMHLSDHGHPSLHLT 284


>Glyma04g09890.1 
          Length = 775

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 24/141 (17%)

Query: 5   HEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATK------------LFRCYSRIS 52
           H   V KL VE G+P+ ++S  EDG ++  D R  ++              L    S   
Sbjct: 147 HTRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSK 206

Query: 53  KKMYGP--SIIELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQ-----WRDLALKSDRP 105
           + +  P   ++ L S  I    PH + VGGS  +ARLYD R        W+ +   S  P
Sbjct: 207 RSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCWKRM---SPPP 263

Query: 106 LETYFCPHHLI--GSYRIHIT 124
              YFCP HL   G   +H+T
Sbjct: 264 CVNYFCPMHLSDHGHPSLHLT 284