Miyakogusa Predicted Gene

Lj3g3v1149120.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1149120.2 tr|G7ITP8|G7ITP8_MEDTR Histone transcription
regulator HIRA OS=Medicago truncatula GN=MTR_2g086140
P,77.54,0,SUBFAMILY NOT NAMED,NULL; MEMBER OF THE HIR1 FAMILY OF
WD-REPEAT PROTEINS,NULL; Hira,TUP1-like enhan,CUFF.42315.2
         (612 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g39430.1                                                       843   0.0  
Glyma12g30890.1                                                       838   0.0  
Glyma11g19140.1                                                       489   e-138
Glyma13g39430.2                                                       379   e-105
Glyma09g24570.1                                                       207   2e-53
Glyma11g29850.1                                                       128   2e-29
Glyma08g37580.1                                                       125   2e-28
Glyma18g23580.1                                                        62   2e-09

>Glyma13g39430.1 
          Length = 1004

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/572 (75%), Positives = 462/572 (80%), Gaps = 46/572 (8%)

Query: 3    KAFVHAGVTTKNVEPQVDDGIKSGGPAGDGSDKVTTSGRISSPVKQREYRRPDGRKRIIP 62
            KA+V   VT KN E Q DDG KSGGP GD S+K  TSGRISSPVKQREYRRPDGR+RIIP
Sbjct: 432  KAYVDVAVTAKNAELQNDDGKKSGGPVGDVSNKAATSGRISSPVKQREYRRPDGRRRIIP 491

Query: 63   EAVGV--QQENISG--QQALDFPFVSSDHRKAPDRAVSNNDDIRASTLGGANFRSSDLKE 118
            EAVGV  QQENISG  QQAL+F  VSSDHRK  +RAVSN D  R  TLGGA+ R++D+KE
Sbjct: 492  EAVGVPVQQENISGALQQALNFRIVSSDHRKDIERAVSNEDGARVCTLGGAHGRNTDIKE 551

Query: 119  RSGVTARATISESLVIQKVPASAGDGSINVEQLGNMMTXXXXXXXGATLTIRVFDKKGDD 178
            RSGVTARATISESLVI+KVPASAGDGS+NVEQ  N+M+         TL+IRVFDKK  +
Sbjct: 552  RSGVTARATISESLVIEKVPASAGDGSVNVEQSSNLMSSSSLAACSGTLSIRVFDKKSGE 611

Query: 179  GTSPILLEARPREHVVTDIAGVGNTSMTKETEILCTRGPHTLWSDRISGKVTVLAGNVNF 238
             +SPILLEARPREH V DI G+GNTS+ KETEI+C++GPHTLWSDRISGKVTVLAGN NF
Sbjct: 612  DSSPILLEARPREHAVNDIVGLGNTSIMKETEIVCSKGPHTLWSDRISGKVTVLAGNGNF 671

Query: 239  WAVGCEDGSLQ-IYSKCGRRAMPTMMMGSAATFVDCDECWKLLLVTRKGSLYLWDLFNRT 297
            WAVGC+DG LQ IY+KCGRRAMPTMMMGSAATFVDCDECW LLLVTRKGSLYLWDLFNRT
Sbjct: 672  WAVGCDDGCLQKIYTKCGRRAMPTMMMGSAATFVDCDECWTLLLVTRKGSLYLWDLFNRT 731

Query: 298  CLLQDSLASLVTSSPNSSAK---------------------------------------- 317
            CLLQDSL SLV SSPNS                                           
Sbjct: 732  CLLQDSLTSLVASSPNSCLVFNYGLCLTVYYFFLCMRTTCPGFPTICLFSVALCYLKIYH 791

Query: 318  -DAGTIKVISAKLSKSGSPLVVLATRHAFLFDMSFKCWLRVADDCFPASNFASSWSLGSI 376
              +GTIKVIS KLSKSGSPLVVLATRHAFLFDM+ KCWLRVADD FPASNF+SSWSLGSI
Sbjct: 792  FFSGTIKVISVKLSKSGSPLVVLATRHAFLFDMNVKCWLRVADDFFPASNFSSSWSLGSI 851

Query: 377  HGGELADLQVDLRKYMARKPGWTRVTDDGVQTRAHLESQLASSLALGSPNDYRQCLLSYV 436
              GELA LQVDLRKY+ARKPGWTRVTDDGVQTRAHLE+QLASSLALGSPN+YRQCLLSYV
Sbjct: 852  QSGELAALQVDLRKYLARKPGWTRVTDDGVQTRAHLETQLASSLALGSPNEYRQCLLSYV 911

Query: 437  RFLAREADESRLREVCESFLGPPTGMAEEASPDSNKLAWDPFVLGMRKHQLLREDILPSM 496
            RFLAREADESRLREVCESFLGPPTGM EE S DS  LAWDP VLGMRKH+LLREDILPSM
Sbjct: 912  RFLAREADESRLREVCESFLGPPTGMVEETSSDSKNLAWDPMVLGMRKHKLLREDILPSM 971

Query: 497  ASNRKVQRLLNEFTDLLSEYDIVDDNQDQRNP 528
            ASNRKVQRLLNEF DLLSEY+I+D NQ+Q NP
Sbjct: 972  ASNRKVQRLLNEFMDLLSEYEIIDANQEQSNP 1003


>Glyma12g30890.1 
          Length = 999

 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/601 (71%), Positives = 471/601 (78%), Gaps = 45/601 (7%)

Query: 4   AFVHAGVTTKNVEPQVDDGIKSGGPAGDGSDKVTTSGRISSPVKQREYRRPDGRKRIIPE 63
           A+V A V  KN EPQ DDG KSGGP GD S+K  T+GRISSPVKQREYRRPDGRKRIIPE
Sbjct: 432 AYVDAVVNAKNAEPQNDDGKKSGGPVGDVSNKAATAGRISSPVKQREYRRPDGRKRIIPE 491

Query: 64  AVG--VQQENISG--QQALDFPFVSSDHRKAPDRAVSNNDDIRASTLGGANFRSSDLKER 119
           AVG  VQQENISG  QQALDFP VSSDHRK  +RA+S++D  R STLGGA+ R++DLKER
Sbjct: 492 AVGMPVQQENISGAVQQALDFPIVSSDHRKDTERALSSDDGARVSTLGGAHGRNTDLKER 551

Query: 120 SGVTARATISESLVIQKVPASAGDGSINVEQLGNMMTXXXXXXXGATLTIRVFDKKGDDG 179
           SGVTARATISESL+I+KVPASAGDGS+NVEQ GN+M+         TL+IRVFDKK  + 
Sbjct: 552 SGVTARATISESLMIEKVPASAGDGSVNVEQSGNLMSSSSLAACSGTLSIRVFDKKSGED 611

Query: 180 TSPILLEARPREHVVTDIAGVGNTSMTKETEILCTRGPHTLWSDRISGKVTVLAGNVNFW 239
           +SPI LEARPREH V DI G+GNTS+ KETEI+C++GP TLWSDRISGKVTVLAGN NFW
Sbjct: 612 SSPIHLEARPREHAVNDIVGLGNTSIMKETEIVCSKGPQTLWSDRISGKVTVLAGNGNFW 671

Query: 240 AVGCEDGSLQIYSKCGRRAMPTMMMGSAATFVDCDECWKLLLVTRKGSLYLWDLFNRTCL 299
           AVGCEDG LQIY+KCGRRAMPTMMMGSA TFVDCDECW LLLVTRKGSLY+WDLFN+TCL
Sbjct: 672 AVGCEDGCLQIYTKCGRRAMPTMMMGSATTFVDCDECWTLLLVTRKGSLYMWDLFNQTCL 731

Query: 300 LQDSLASLVTSSPNSSAKDAGTIKVISAKLSKSGSPLVVLATRHAFLFDMSFKCWLRVAD 359
           LQDS                    V +  L         L   H F       CWLRVAD
Sbjct: 732 LQDSCL------------------VFNYGL--------CLTVYHFFF------CWLRVAD 759

Query: 360 DCFPASNFASSWSLGSIHGGELADLQVDLRKYMARKPGWTRVTDDGVQTRAHLESQLASS 419
           DCFPASNF+SSWSLGSI  GELA LQVDLRKY+ARKPGWTRVTDDGVQTRAHLE+QLASS
Sbjct: 760 DCFPASNFSSSWSLGSIQSGELAALQVDLRKYLARKPGWTRVTDDGVQTRAHLETQLASS 819

Query: 420 LALGSPNDYRQCLLSYVRFLAREADESRLREVCESFLGPPTGMAEEASPDSNKLAWDPFV 479
           LALGSPN+YRQCLLSYVRFLAREADESRLREVCESFLGPPTGM EE S DS  LAWDPFV
Sbjct: 820 LALGSPNEYRQCLLSYVRFLAREADESRLREVCESFLGPPTGMVEETSSDSKNLAWDPFV 879

Query: 480 LGMRKHQLLREDILPSMASNRKVQRLLNEFTDLLSEYDIVDDNQDQRNPMLPKSSSLGTK 539
           LGMRKH+LLREDILPSMASNRKVQRLLNEF DLLSEY+I+D NQ+Q NP +P SS   T 
Sbjct: 880 LGMRKHKLLREDILPSMASNRKVQRLLNEFMDLLSEYEIIDANQEQTNPTVPNSSLPETN 939

Query: 540 PIENGSLAKDHEENSDHAAMDCQDNT-LDQTRV-----LPNEASSDAHMTDQVNQDAQVN 593
           PIE+ SLA D E     A    + NT L++ ++     L NEAS+D  MTDQ NQDAQV 
Sbjct: 940 PIESSSLATDREHT---APPKLEHNTPLEKEQINFPPALANEASADTPMTDQANQDAQVK 996

Query: 594 E 594
           E
Sbjct: 997 E 997


>Glyma11g19140.1 
          Length = 929

 Score =  489 bits (1258), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 272/441 (61%), Positives = 303/441 (68%), Gaps = 47/441 (10%)

Query: 13  KNVEPQVDDGIKSGGPAGDGSDKVTTSGRISSPVKQREYRRPDGRKRIIPEAVGV--QQE 70
           K  EPQVDD  KSGG  GDG    T S RIS+PVKQREYRRPDGRKRIIPEAVGV  QQE
Sbjct: 388 KKAEPQVDDCKKSGGTIGDGLSNATASARISNPVKQREYRRPDGRKRIIPEAVGVPVQQE 447

Query: 71  NIS---GQQALDFPFVSSDHRKAPDRAVSNNDDIRASTLGGANFRSSDLKERSGVTARAT 127
           NIS     QA DFP +           ++      ASTLGGA  R SDLKERSGVTARA 
Sbjct: 448 NISCVVQSQAHDFPLI----------LITEWVTFEASTLGGALGRKSDLKERSGVTARAI 497

Query: 128 ISESLVIQKVPASAG-DGSINVEQLGNMMTXXXXXXXGATLTIRVFDKKGDDGTSPILLE 186
           + ESL I+KVPAS+G DG+INVEQLGN  T        ATL+IRVFD K    TSPI LE
Sbjct: 498 VLESLGIEKVPASSGIDGNINVEQLGNSTTTGSLSASCATLSIRVFDYKSGADTSPICLE 557

Query: 187 ARPREHVVTDIAGVGNTSMTKETEILCTRGPHTLWSDRISGKVTVLAGNVNFWAVGCEDG 246
           AR REH V DI G+GNTSM +ETEI CTRGP TLWSDRIS KVTVLA N NF AVGCEDG
Sbjct: 558 ARLREHAVNDIIGIGNTSMMRETEIACTRGPQTLWSDRISRKVTVLARNANFGAVGCEDG 617

Query: 247 SLQIYSKCGRRA------MPTMMMGSAATFVDCDECWKLLLVTRKGSLYLWDLFNRTCLL 300
             Q       +       +PT+              +KLL+   K   +L  L N  C++
Sbjct: 618 CFQFVQASIEKKNLLPLHLPTL--------------YKLLITGEKIVAFLQWLANSQCVI 663

Query: 301 QDSLASLVTSSPNSSAKDAGTIKVISAKLSKSGSPLVVLATRHAFLFDMSFKCWLRVADD 360
              + +++T           TIKVI A+LSKSGSPLVVLATR AFLFDMS KCWLRVADD
Sbjct: 664 L--IGAVIT---------VCTIKVIFARLSKSGSPLVVLATRQAFLFDMSLKCWLRVADD 712

Query: 361 CFPASNFASSWSLGSIHGGELADLQVDLRKYMARKPGWTRVTDDGVQTRAHLESQLASSL 420
           CFPASNFASSWS+GSI  GELA LQVD+RKY+ARKPGWTR+TDDGVQTRAHLE+QLAS+L
Sbjct: 713 CFPASNFASSWSMGSIQSGELAALQVDVRKYLARKPGWTRLTDDGVQTRAHLEAQLASAL 772

Query: 421 ALGSPNDYRQCLLSYVRFLAR 441
           AL S  +YRQCLLSYV FLAR
Sbjct: 773 ALESSKEYRQCLLSYVHFLAR 793



 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 54/63 (85%), Gaps = 1/63 (1%)

Query: 450 EVCESFLGPPTGMAEEASPDSNKLAWDPFVLGMRKHQLLREDILPSMASNRKVQRLLNEF 509
           E  ESFLGPPTGMA EAS DS K AWDPFVLGMRKH+LL EDILPSMASNRKV RLLNEF
Sbjct: 868 ENSESFLGPPTGMAGEASSDS-KSAWDPFVLGMRKHKLLIEDILPSMASNRKVHRLLNEF 926

Query: 510 TDL 512
            DL
Sbjct: 927 MDL 929


>Glyma13g39430.2 
          Length = 251

 Score =  379 bits (973), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/250 (74%), Positives = 204/250 (81%), Gaps = 5/250 (2%)

Query: 349 MSFKCWLRVADDCFPASNFASSWSLGSIHGGELADLQVDLRKYMARKPGWTRVTDDGVQT 408
           M+ KCWLRVADD FPASNF+SSWSLGSI  GELA LQVDLRKY+ARKPGWTRVTDDGVQT
Sbjct: 1   MNVKCWLRVADDFFPASNFSSSWSLGSIQSGELAALQVDLRKYLARKPGWTRVTDDGVQT 60

Query: 409 RAHLESQLASSLALGSPNDYRQCLLSYVRFLAREADESRLREVCESFLGPPTGMAEEASP 468
           RAHLE+QLASSLALGSPN+YRQCLLSYVRFLAREADESRLREVCESFLGPPTGM EE S 
Sbjct: 61  RAHLETQLASSLALGSPNEYRQCLLSYVRFLAREADESRLREVCESFLGPPTGMVEETSS 120

Query: 469 DSNKLAWDPFVLGMRKHQLLREDILPSMASNRKVQRLLNEFTDLLSEYDIVDDNQDQRNP 528
           DS  LAWDP VLGMRKH+LLREDILPSMASNRKVQRLLNEF DLLSEY+I+D NQ+Q NP
Sbjct: 121 DSKNLAWDPMVLGMRKHKLLREDILPSMASNRKVQRLLNEFMDLLSEYEIIDANQEQSNP 180

Query: 529 MLPKSSSLGTKPIENGSLAKDHEENS----DHAAMDCQDNTLDQTRVLPNEASSDAHMTD 584
            +P SS   T PIE+ SLA D E  +    DH     +   ++    L +EAS+D  MTD
Sbjct: 181 TVPNSSLPETNPIESSSLATDQEHTAPPKLDHNT-PLEKEQINFPPALTDEASADTPMTD 239

Query: 585 QVNQDAQVNE 594
           Q NQDAQV E
Sbjct: 240 QANQDAQVKE 249


>Glyma09g24570.1 
          Length = 140

 Score =  207 bits (528), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 98/140 (70%), Positives = 109/140 (77%), Gaps = 4/140 (2%)

Query: 250 IYSKCGRRAMPTMMMGSAATFVDCDECWKLLLVTRKGSLYLWDLFNRTCLLQDSLASLVT 309
           IY+KCGRRAMP MMMGSA TF+DCDECWKLLLVTR  SLYLWDLF++T L  DSLASL+ 
Sbjct: 1   IYTKCGRRAMPIMMMGSATTFIDCDECWKLLLVTRNKSLYLWDLFDKTYLHHDSLASLLA 60

Query: 310 SSPNSSAKDAGTIKVISAKLSKSGS----PLVVLATRHAFLFDMSFKCWLRVADDCFPAS 365
           SSPNSSAKD GTI  +   + K+      PLVV ATRHAFLFDMS KCWLRVA+D FPAS
Sbjct: 61  SSPNSSAKDVGTIYYLHIYICKAIKIWFYPLVVFATRHAFLFDMSLKCWLRVANDYFPAS 120

Query: 366 NFASSWSLGSIHGGELADLQ 385
           NF SSW +G I  G L+ LQ
Sbjct: 121 NFDSSWCMGLIQSGVLSALQ 140


>Glyma11g29850.1 
          Length = 299

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 76/103 (73%), Gaps = 3/103 (2%)

Query: 169 IRVFDKKGDDGTSPILLEARPREHVVTDIAGVGNTSMT-KETEILCTRGPHTLWSDRISG 227
           +R+FD   +   +   LEA P E  V+ +       +T +ETEI+C++GP TLWS RISG
Sbjct: 83  VRIFDVNSNATIAT--LEAPPSEVEVSQMHFDPKREITVQETEIVCSKGPQTLWSARISG 140

Query: 228 KVTVLAGNVNFWAVGCEDGSLQIYSKCGRRAMPTMMMGSAATF 270
           KVTVLAGN NFW VGCEDG LQIY+KCGRRAMPTMMMGSAATF
Sbjct: 141 KVTVLAGNGNFWRVGCEDGCLQIYTKCGRRAMPTMMMGSAATF 183


>Glyma08g37580.1 
          Length = 236

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 76/103 (73%), Gaps = 3/103 (2%)

Query: 169 IRVFDKKGDDGTSPILLEARPREHVVTDIAGVGNTSMT-KETEILCTRGPHTLWSDRISG 227
           +RVF+   +  T+   L+A P E  V+ +       +T +ETEI+C++GP TLWS RISG
Sbjct: 59  VRVFNV--NSNTTIATLKAPPSEVEVSQMHFDPKREITVQETEIVCSKGPQTLWSARISG 116

Query: 228 KVTVLAGNVNFWAVGCEDGSLQIYSKCGRRAMPTMMMGSAATF 270
           KVT+LAGN NFWAVGCEDG LQIY+KCGRRAMPTMMMG A TF
Sbjct: 117 KVTILAGNGNFWAVGCEDGCLQIYTKCGRRAMPTMMMGYATTF 159


>Glyma18g23580.1 
          Length = 57

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 4/44 (9%)

Query: 352 KCW----LRVADDCFPASNFASSWSLGSIHGGELADLQVDLRKY 391
           +CW    LRVA+D FPASNF+SSW +G I  GEL  LQVD+RKY
Sbjct: 14  ECWKLLQLRVANDYFPASNFSSSWCMGLIQSGELVALQVDVRKY 57