Miyakogusa Predicted Gene

Lj3g3v0966470.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0966470.1 tr|C0Z2Y2|C0Z2Y2_ARATH AT1G79040 protein
OS=Arabidopsis thaliana GN=AT1G79040 PE=4 SV=1,67.61,5e-19,seg,NULL;
PsbR,Photosystem II PsbR,CUFF.42327.1
         (139 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g18510.1                                                       195   2e-50
Glyma15g40450.1                                                       186   8e-48

>Glyma08g18510.1 
          Length = 139

 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/139 (72%), Positives = 107/139 (76%)

Query: 1   MASSVMASVSLKPAGFSLEKSSVRGLPXXXXXXXXXXXXXXGGKKIKTDTPYGTGGGMNL 60
           MASSVMASV+LKPA F++EKSSVRGLP              GGKKIKTD PYG  GGM L
Sbjct: 1   MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASGGKKIKTDKPYGINGGMAL 60

Query: 61  RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTX 120
           R GVDASGRK +GKGVYQ+VDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVT 
Sbjct: 61  REGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120

Query: 121 XXXXXXXXXXVYNTSALSQ 139
                     VYNTSAL+Q
Sbjct: 121 LGLLAGGALLVYNTSALAQ 139


>Glyma15g40450.1 
          Length = 138

 Score =  186 bits (471), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 99/139 (71%), Positives = 105/139 (75%), Gaps = 1/139 (0%)

Query: 1   MASSVMASVSLKPAGFSLEKSSVRGLPXXXXXXXXXXXXXXGGKKIKTDTPYGTGGGMNL 60
           MASSVMASV+LKPA F++EKSSVRGLP              G KKIKTD PYG  GGM L
Sbjct: 1   MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASG-KKIKTDKPYGINGGMAL 59

Query: 61  RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTX 120
           R+G DASGRK +GKGVYQ+VDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVT 
Sbjct: 60  RDGTDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 119

Query: 121 XXXXXXXXXXVYNTSALSQ 139
                     VYNTSAL Q
Sbjct: 120 LGLLAGGALLVYNTSALVQ 138