Miyakogusa Predicted Gene

Lj3g3v0965910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0965910.1 tr|A9T314|A9T314_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_87421
,42.11,1e-18,RRM_1,RNA recognition motif domain; RNA recognition
motif,RNA recognition motif domain; no descripti,CUFF.41913.1
         (425 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g18310.1                                                       187   2e-47
Glyma15g40710.1                                                       186   5e-47
Glyma12g29410.1                                                       102   9e-22
Glyma18g19680.1                                                        70   4e-12
Glyma16g34330.1                                                        63   6e-10
Glyma06g41210.1                                                        57   4e-08
Glyma13g40880.1                                                        56   8e-08
Glyma19g38790.1                                                        55   1e-07
Glyma03g35650.1                                                        55   1e-07
Glyma15g04550.1                                                        55   2e-07
Glyma03g36130.1                                                        54   4e-07
Glyma12g06120.2                                                        53   7e-07
Glyma12g06120.3                                                        53   7e-07
Glyma12g06120.1                                                        53   7e-07
Glyma12g17150.1                                                        53   8e-07
Glyma10g10220.1                                                        52   9e-07
Glyma11g14150.1                                                        52   2e-06
Glyma11g07200.2                                                        52   2e-06
Glyma11g07200.1                                                        52   2e-06
Glyma01g38120.1                                                        51   2e-06
Glyma08g26900.1                                                        51   3e-06
Glyma20g38060.1                                                        50   5e-06
Glyma20g38060.2                                                        50   6e-06
Glyma18g50150.1                                                        49   9e-06
Glyma05g00400.2                                                        49   1e-05

>Glyma08g18310.1 
          Length = 422

 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/116 (75%), Positives = 93/116 (80%)

Query: 103 RESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEK 162
           RESLVLHVEKLSRNVNEGHLKEIFSN+GEV+SVELAMDR VNLPKGY YVQFK RG+AEK
Sbjct: 101 RESLVLHVEKLSRNVNEGHLKEIFSNFGEVISVELAMDRTVNLPKGYGYVQFKTRGEAEK 160

Query: 163 ALLYMDGAQIDGNVIKARFTLXXXXXXXXXXXXXXXXXXREAPRTDNAGADIEKDG 218
           ALLYMDGAQIDGNVIKARFTL                  RE PRTDNA AD++KDG
Sbjct: 161 ALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKTSAVAPKREIPRTDNASADVDKDG 216


>Glyma15g40710.1 
          Length = 422

 Score =  186 bits (472), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 92/116 (79%)

Query: 103 RESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEK 162
           RESLVLHVEKLSRNVNEGHLKEIFSN+GEV+SVELAMDR VNLPKGY YVQFK RGDAEK
Sbjct: 101 RESLVLHVEKLSRNVNEGHLKEIFSNFGEVISVELAMDRTVNLPKGYGYVQFKTRGDAEK 160

Query: 163 ALLYMDGAQIDGNVIKARFTLXXXXXXXXXXXXXXXXXXREAPRTDNAGADIEKDG 218
           ALLYMDGAQIDGNVIKARFTL                  R+ PR DNA AD++KDG
Sbjct: 161 ALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKASAVAPKRDTPRADNASADVDKDG 216


>Glyma12g29410.1 
          Length = 454

 Score =  102 bits (254), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 127 SNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYMDGAQIDGNVIKARFTLXXX 186
            N+G ++SVELAMDR VNLPKGY YVQFK RGDAE+       AQIDGNV+KAR+TL   
Sbjct: 132 CNFGGIISVELAMDRTVNLPKGYGYVQFKTRGDAERHYSTW-VAQIDGNVMKARYTLPPR 190

Query: 187 XXXXXXXXXXXXXXXREAPRTDNAGADIEKDG 218
                          R+ PRTDNA AD+ KDG
Sbjct: 191 QKVSPPPKAFAVAPKRDTPRTDNASADVNKDG 222


>Glyma18g19680.1 
          Length = 127

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 56/115 (48%), Gaps = 24/115 (20%)

Query: 104 ESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKA 163
           ESLVLHVEKLS+NVNEGHLKEIF                      + +++   +    K 
Sbjct: 7   ESLVLHVEKLSKNVNEGHLKEIFLT-------------------SWKWIELSRQEGMLKR 47

Query: 164 LLYMDGAQIDGNVIKARFTLXXXXXXXXXXXXXXXXXXREAPRTDNAGADIEKDG 218
                 AQIDGN +KARFTL                   + PRTDNA A+++KDG
Sbjct: 48  HYCTWMAQIDGNAMKARFTLPPRQKVSPPPKAYV-----DTPRTDNASANVDKDG 97


>Glyma16g34330.1 
          Length = 180

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 45/70 (64%)

Query: 108 LHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYM 167
           L+V  LS    E  L+  F N+G++V V+L MDRI N P+G+A++++    +++KA+  M
Sbjct: 90  LYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGM 149

Query: 168 DGAQIDGNVI 177
            G  +DG VI
Sbjct: 150 HGKFLDGRVI 159


>Glyma06g41210.1 
          Length = 145

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query: 108 LHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYM 167
           L V  LS+  N   L+E F+ +GEVV   +  DR+    KG+ +VQ+    DA K +  M
Sbjct: 51  LFVSGLSKRTNTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIEGM 110

Query: 168 DGAQIDGNVIKARF 181
           DG  +DG VI A +
Sbjct: 111 DGKFLDGWVIFAEY 124


>Glyma13g40880.1 
          Length = 86

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%)

Query: 108 LHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYM 167
           L V +LS    +  LK++FS +G V   +LA+D I   PKG+ +V FK+  +AEKA   M
Sbjct: 9   LFVHRLSFYTTQEQLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKACKAM 68

Query: 168 DGAQIDGNVI 177
           +G  ++G +I
Sbjct: 69  NGRIVNGRLI 78


>Glyma19g38790.1 
          Length = 317

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%)

Query: 108 LHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYM 167
           L+V  L  ++    L E+F   G V SVE+  DR+ +  +G+A+V   +  DA++A+   
Sbjct: 110 LYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRMF 169

Query: 168 DGAQIDGNVIKARF 181
           DG+Q+ G  +K  F
Sbjct: 170 DGSQVGGRTVKVNF 183


>Glyma03g35650.1 
          Length = 130

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%)

Query: 108 LHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYM 167
           L V  LS    E  L E FSNYG+V+  ++  DR+ +  KG+ +V F ++ +AE A+  M
Sbjct: 31  LFVGGLSFYTTENALSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDEAENAIEDM 90

Query: 168 DGAQIDGNVI 177
            G  ++G VI
Sbjct: 91  KGKTLNGRVI 100


>Glyma15g04550.1 
          Length = 74

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query: 121 HLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYMDGAQIDGNVI 177
            LK++FS +G V   +LA+D I   PKG+ +V FK+  +AEKAL  M+G  + G +I
Sbjct: 10  QLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKALRAMNGRIVSGRLI 66


>Glyma03g36130.1 
          Length = 314

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 41/74 (55%)

Query: 108 LHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYM 167
           L+V  L  ++    L E+F   G V SVE+  DR+ +  +G+A+V      DA++A+   
Sbjct: 107 LYVGNLPYSITNSALAELFGEAGTVASVEIMYDRVTDRSRGFAFVTMGNVEDAKEAIRMF 166

Query: 168 DGAQIDGNVIKARF 181
           DG+Q+ G  +K  F
Sbjct: 167 DGSQVGGRTVKVNF 180


>Glyma12g06120.2 
          Length = 260

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 42/72 (58%)

Query: 104 ESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKA 163
           E   L +  L   V+E +L + F++ GEVVS+++  +++   P+GY +V+F +   AE  
Sbjct: 8   EVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAF 67

Query: 164 LLYMDGAQIDGN 175
           L   +GAQ+ G 
Sbjct: 68  LRTFNGAQMPGT 79


>Glyma12g06120.3 
          Length = 352

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 42/72 (58%)

Query: 104 ESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKA 163
           E   L +  L   V+E +L + F++ GEVVS+++  +++   P+GY +V+F +   AE  
Sbjct: 8   EVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAF 67

Query: 164 LLYMDGAQIDGN 175
           L   +GAQ+ G 
Sbjct: 68  LRTFNGAQMPGT 79


>Glyma12g06120.1 
          Length = 400

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 42/72 (58%)

Query: 104 ESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKA 163
           E   L +  L   V+E +L + F++ GEVVS+++  +++   P+GY +V+F +   AE  
Sbjct: 8   EVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAF 67

Query: 164 LLYMDGAQIDGN 175
           L   +GAQ+ G 
Sbjct: 68  LRTFNGAQMPGT 79


>Glyma12g17150.1 
          Length = 145

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%)

Query: 108 LHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYM 167
           L V  LS+      L+E F+ +GEVV   +  DR+    KG+ +VQ+    +A K +  M
Sbjct: 51  LFVSGLSKRTTTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEEAAKGIEGM 110

Query: 168 DGAQIDGNVIKARF 181
           DG  +DG VI A +
Sbjct: 111 DGKFLDGWVIFAEY 124


>Glyma10g10220.1 
          Length = 207

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query: 108 LHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYM 167
           L V  L  ++    L + F   G VVSVE+  D I++  +G+A+V   +  DAE+A+   
Sbjct: 1   LFVGNLPYSLLSSQLAQRFGEAGNVVSVEIVYDDIMDRSRGFAFVTMGSMEDAERAIRMF 60

Query: 168 DGAQIDGNVIKARFT 182
           DG++I G ++K  FT
Sbjct: 61  DGSEIGGRIMKVNFT 75


>Glyma11g14150.1 
          Length = 401

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 42/72 (58%)

Query: 104 ESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKA 163
           E   L +  L   V+E +L + F++ GEVVS+++  +++   P+GY +V+F +   AE  
Sbjct: 8   EVRTLWIGDLQYWVDESYLSQCFAHNGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAF 67

Query: 164 LLYMDGAQIDGN 175
           L   +GAQ+ G 
Sbjct: 68  LRTYNGAQMPGT 79


>Glyma11g07200.2 
          Length = 480

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%)

Query: 107 VLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLY 166
            L V KLS    E  +K  F +YG +  V L  D+ +N P+GYA++++    D + A   
Sbjct: 142 TLFVAKLSYETTESRIKREFESYGPIKRVRLVADKDINKPRGYAFIEYLHTRDMKAAYKQ 201

Query: 167 MDGAQIDGNVI 177
            DG +IDG  +
Sbjct: 202 ADGRKIDGRRV 212


>Glyma11g07200.1 
          Length = 482

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%)

Query: 107 VLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLY 166
            L V KLS    E  +K  F +YG +  V L  D+ +N P+GYA++++    D + A   
Sbjct: 142 TLFVAKLSYETTESRIKREFESYGPIKRVRLVADKDINKPRGYAFIEYLHTRDMKAAYKQ 201

Query: 167 MDGAQIDGNVI 177
            DG +IDG  +
Sbjct: 202 ADGRKIDGRRV 212


>Glyma01g38120.1 
          Length = 481

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%)

Query: 107 VLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLY 166
            L V KLS    E  +K  F +YG +  V L  D+  N P+GYA++++    D + A   
Sbjct: 142 TLFVAKLSYETTESRIKREFESYGPIKRVRLVADKDTNKPRGYAFIEYLHTRDMKAAYKQ 201

Query: 167 MDGAQIDGNVI 177
            DG +IDG  +
Sbjct: 202 ADGRKIDGRRV 212


>Glyma08g26900.1 
          Length = 245

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%)

Query: 105 SLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKAL 164
           S  L V  +S + ++  L+E F+ YGEV+ V++ MDR     +G+ ++ F    DA  A+
Sbjct: 39  SAKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFITFATSEDASSAI 98

Query: 165 LYMDGAQIDGNVIKARF 181
             MDG  + G  I+  +
Sbjct: 99  QGMDGQDLHGRRIRVNY 115


>Glyma20g38060.1 
          Length = 271

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 103 RESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEK 162
           R S  ++V  L  +V    ++++F  YG +V ++L   +I   P GYA+V+F+   DAE 
Sbjct: 4   RSSRTIYVGNLPGDVRLREVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDARDAED 60

Query: 163 ALLYMDGAQIDG 174
           A+ Y DG   DG
Sbjct: 61  AIQYRDGYNFDG 72


>Glyma20g38060.2 
          Length = 265

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 103 RESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEK 162
           R S  ++V  L  +V    ++++F  YG +V ++L   +I   P GYA+V+F+   DAE 
Sbjct: 4   RSSRTIYVGNLPGDVRLREVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDARDAED 60

Query: 163 ALLYMDGAQIDG 174
           A+ Y DG   DG
Sbjct: 61  AIQYRDGYNFDG 72


>Glyma18g50150.1 
          Length = 244

 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query: 105 SLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKAL 164
           S  L V  +S + ++  L+E F+ YGEV+  ++ MDR     +G+ +V F    DA  A+
Sbjct: 39  SAKLFVGGISYSTDDMSLRESFARYGEVIDGKVIMDRETGRSRGFGFVTFATSEDASSAI 98

Query: 165 LYMDGAQIDGNVIKARF 181
             MDG  + G  I+  +
Sbjct: 99  QGMDGQDLHGRRIRVNY 115


>Glyma05g00400.2 
          Length = 245

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%)

Query: 105 SLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKAL 164
           S  L +  +S + +E  L+E FS YGEVV   + MDR     +G+ ++ + +  +A  A+
Sbjct: 41  STKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAI 100

Query: 165 LYMDGAQIDGNVIKARF 181
             +DG  + G  I+  +
Sbjct: 101 QALDGQDLHGRPIRVNY 117