Miyakogusa Predicted Gene

Lj3g3v0965630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0965630.1 tr|B9SHS2|B9SHS2_RICCO DNA-directed RNA
polymerase OS=Ricinus communis GN=RCOM_0620590 PE=3
SV=1,90,0.0000000000003,beta and beta-prime subunits of DNA dependent
RNA-polymerase,NULL; RNA_pol_Rpb2_6,DNA-directed RNA p,CUFF.41883.1
         (134 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g00980.1                                                       245   8e-66
Glyma07g14950.1                                                       243   3e-65
Glyma09g07570.1                                                       155   1e-38
Glyma15g18790.1                                                       155   2e-38
Glyma04g06440.1                                                       109   7e-25
Glyma06g06480.1                                                       109   8e-25
Glyma15g08000.1                                                       105   1e-23
Glyma17g23500.2                                                       103   5e-23
Glyma17g23500.1                                                       103   5e-23
Glyma13g26190.1                                                       102   9e-23

>Glyma01g00980.1 
          Length = 795

 Score =  245 bits (626), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 115/133 (86%), Positives = 124/133 (93%)

Query: 1   MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
           MGPIYYQKLKHMVLDKMHARG+GPR  L RQPTEG+ARNGGLR+GEMERDCLIAYGASML
Sbjct: 662 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 721

Query: 61  IFERLMLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCKNGDQISNMKLPYACKLLIQEL 120
           I+ERLMLSSDPFEVQVC +CGLLGYYN+KLK G+C SCKNGD IS MKLPYACKL+IQEL
Sbjct: 722 IYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLMIQEL 781

Query: 121 QSMNIVPRLKLEE 133
           QSMNIVPRLKL +
Sbjct: 782 QSMNIVPRLKLAD 794


>Glyma07g14950.1 
          Length = 134

 Score =  243 bits (621), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 115/133 (86%), Positives = 124/133 (93%)

Query: 1   MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
           MGPIYYQKLKHMVLDKMHARG+GPR  L RQPTEG+ARNGGLR+GEMERDCLIAYGASML
Sbjct: 1   MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 60

Query: 61  IFERLMLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCKNGDQISNMKLPYACKLLIQEL 120
           I+ERLMLSSDPFEVQVC +CGLLGYYN+KLK G+C SCKNGD IS MKLPYACKL+IQEL
Sbjct: 61  IYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLMIQEL 120

Query: 121 QSMNIVPRLKLEE 133
           QSMNIVPRLKL +
Sbjct: 121 QSMNIVPRLKLAD 133


>Glyma09g07570.1 
          Length = 1192

 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/133 (54%), Positives = 90/133 (67%)

Query: 1    MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
            +GP YYQ+LKHMV DK+H+RG GP   L RQP EG++R+GGLR GEMERDC+IA+GA+  
Sbjct: 1050 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHF 1109

Query: 61   IFERLMLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCKNGDQISNMKLPYACKLLIQEL 120
            + ERL   SD + V VC  CGL+   N K     C  CKN   I  + +PYACKLL QEL
Sbjct: 1110 LKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQEL 1169

Query: 121  QSMNIVPRLKLEE 133
             +M I PR+  +E
Sbjct: 1170 MAMAIAPRMLTKE 1182


>Glyma15g18790.1 
          Length = 1193

 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/133 (54%), Positives = 90/133 (67%)

Query: 1    MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
            +GP YYQ+LKHMV DK+H+RG GP   L RQP EG++R+GGLR GEMERDC+IA+GA+  
Sbjct: 1050 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHF 1109

Query: 61   IFERLMLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCKNGDQISNMKLPYACKLLIQEL 120
            + ERL   SD + V VC  CGL+   N K     C  CKN   I  + +PYACKLL QEL
Sbjct: 1110 LKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQEL 1169

Query: 121  QSMNIVPRLKLEE 133
             +M I PR+  +E
Sbjct: 1170 MAMAIAPRMLTKE 1182


>Glyma04g06440.1 
          Length = 1086

 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 78/139 (56%), Gaps = 9/139 (6%)

Query: 1    MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
            MGP +YQ+L HM  DK+  R  GP + L RQP   + R GG++ GEMERDCLIA+GAS  
Sbjct: 946  MGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 1005

Query: 61   IFERLMLSSDPFEVQVCRSCGLLGYY-------NYKLKIGVCPSCKNGDQISNMKLPYAC 113
            ++ERL   SD  ++ +C  C  +            K++   C  C++ D I    +PY  
Sbjct: 1006 LYERLFTLSDSSQIHICSKCKKVANVILRPVSGGRKIRGPYCRHCESADDIVVAHVPYGA 1065

Query: 114  KLLIQELQSMNIVPRLKLE 132
            KLL QEL SM I   LK E
Sbjct: 1066 KLLCQELFSMGI--NLKFE 1082


>Glyma06g06480.1 
          Length = 1124

 Score =  109 bits (272), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 78/139 (56%), Gaps = 9/139 (6%)

Query: 1    MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
            MGP +YQ+L HM  DK+  R  GP + L RQP   + R GG++ GEMERDCLIA+GAS  
Sbjct: 984  MGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 1043

Query: 61   IFERLMLSSDPFEVQVCRSCGLLGYY-------NYKLKIGVCPSCKNGDQISNMKLPYAC 113
            ++ERL   SD  ++ +C  C  +            K++   C  C++ D I    +PY  
Sbjct: 1044 LYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRHCESADDIVVAHVPYGA 1103

Query: 114  KLLIQELQSMNIVPRLKLE 132
            KLL QEL SM I   LK E
Sbjct: 1104 KLLCQELFSMGI--NLKFE 1120


>Glyma15g08000.1 
          Length = 1070

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 62/86 (72%)

Query: 1    MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
            +GP YYQ++KHMV DK+H+RG GP   L RQPTEG++RNGGLR GEMERDC++A+G + L
Sbjct: 974  LGPTYYQRMKHMVDDKIHSRGRGPVQILTRQPTEGRSRNGGLRFGEMERDCMVAHGTAHL 1033

Query: 61   IFERLMLSSDPFEVQVCRSCGLLGYY 86
            + ER +  SD   V VC    L+  Y
Sbjct: 1034 LKERPVDQSDVCRVHVCERLWLVLVY 1059


>Glyma17g23500.2 
          Length = 260

 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 80/151 (52%), Gaps = 18/151 (11%)

Query: 1   MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
           +GP+YYQ+L+HMV DK   R  G  + + RQP +G+ R GG+R GEMERD L+A+GA+ L
Sbjct: 104 IGPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 163

Query: 61  IFERLMLSSDPFEVQVCRSCGLLGYYNYKL-------KIG-----------VCPSCKNGD 102
           + +RL   SD     VC  CG +    +         +IG            C +C+   
Sbjct: 164 LHDRLHTCSDYHIADVCSLCGSMLTTTFTQPQKRPVREIGGLPPGRAPKKVTCHACQTSK 223

Query: 103 QISNMKLPYACKLLIQELQSMNIVPRLKLEE 133
            +  + +PY  + L  EL +MNI   LKL +
Sbjct: 224 GMETVAMPYVFRYLAAELAAMNIKMTLKLSD 254


>Glyma17g23500.1 
          Length = 982

 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 80/151 (52%), Gaps = 18/151 (11%)

Query: 1   MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
           +GP+YYQ+L+HMV DK   R  G  + + RQP +G+ R GG+R GEMERD L+A+GA+ L
Sbjct: 826 IGPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 885

Query: 61  IFERLMLSSDPFEVQVCRSCGLLGYYNYKL-------KIG-----------VCPSCKNGD 102
           + +RL   SD     VC  CG +    +         +IG            C +C+   
Sbjct: 886 LHDRLHTCSDYHIADVCSLCGSMLTTTFTQPQKRPVREIGGLPPGRAPKKVTCHACQTSK 945

Query: 103 QISNMKLPYACKLLIQELQSMNIVPRLKLEE 133
            +  + +PY  + L  EL +MNI   LKL +
Sbjct: 946 GMETVAMPYVFRYLAAELAAMNIKMTLKLSD 976


>Glyma13g26190.1 
          Length = 1223

 Score =  102 bits (255), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 80/151 (52%), Gaps = 18/151 (11%)

Query: 1    MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
            +GP+YYQ+L+HMV DK   R  G  + + RQP +G+ R GG+R GEMERD L+A+GA+ L
Sbjct: 1067 IGPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1126

Query: 61   IFERLMLSSDPFEVQVCRSCGLLGYYNY-------KLKIG-----------VCPSCKNGD 102
            + +RL   SD     VC  CG +    +         +IG            C +C+   
Sbjct: 1127 LHDRLHTCSDYHIADVCSLCGSMLATTFIQPQKRPVREIGGLPPGRAPKKVTCHACQTSK 1186

Query: 103  QISNMKLPYACKLLIQELQSMNIVPRLKLEE 133
             +  + +PY  + L  EL +MNI   LKL +
Sbjct: 1187 GMETVAMPYVFRYLAAELAAMNIKMTLKLSD 1217