Miyakogusa Predicted Gene

Lj3g3v0950950.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0950950.2 Non Chatacterized Hit- tr|B4FL76|B4FL76_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,46.81,0.0000000000009,seg,NULL; NUFIP1,Nuclear fragile X mental
retardation-interacting protein 1, conserved domain,CUFF.41829.2
         (554 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g09290.1                                                       269   5e-72
Glyma17g35900.1                                                       175   1e-43
Glyma14g09270.1                                                       128   1e-29

>Glyma14g09290.1 
          Length = 318

 Score =  269 bits (688), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 140/214 (65%), Positives = 157/214 (73%), Gaps = 28/214 (13%)

Query: 317 SVTYSEQEIQQWREARRKNHPFKDNIQKSEDQKDTKVIDRGVLQKELKEVLAKQAELGIE 376
           SVTY+ QEIQQWREAR+KNHPF +NIQK                  LKEVLAKQAELG+E
Sbjct: 83  SVTYTVQEIQQWREARKKNHPFNNNIQK------------------LKEVLAKQAELGVE 124

Query: 377 VAEIPSHYLKNSENQGFQTEGKNSFTDKRKFQNKFNKKSDRRGRFGKRQKFSHNDISEKP 436
           VAEIPS+YLKNS+NQ  Q+EGKN FTDKRKFQNKFNKKSDR+GRF KRQKF   D SE P
Sbjct: 125 VAEIPSYYLKNSDNQALQSEGKNKFTDKRKFQNKFNKKSDRKGRFAKRQKFDDKDFSESP 184

Query: 437 ALNKKKPTLLEKLLSADIKRDKSHLLQVFRFMVMNSFFKDSPDKPLIYPSVKVKEIGSEG 496
           +L K+KPTLL+KLLS+D+KRDKSHL+QVFRFMVMNSFFK   DKPL YP V VKE GSE 
Sbjct: 185 SLKKRKPTLLQKLLSSDVKRDKSHLIQVFRFMVMNSFFKHCLDKPLRYPLVVVKEKGSEV 244

Query: 497 GCEEKHLHTGKDALERGNEKTVQNIANHSIDNDH 530
                      D L+ GNE+TVQ I   + DN H
Sbjct: 245 D----------DVLKGGNEETVQKIVTFNNDNSH 268


>Glyma17g35900.1 
          Length = 140

 Score =  175 bits (444), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/143 (62%), Positives = 104/143 (72%), Gaps = 24/143 (16%)

Query: 366 VLAKQAELGIEVAEIPSHYLKNSENQGFQTEGKNSFTDKRKFQNKFNKKSDRRGRFGKRQ 425
           VLAKQAELG+EVAEIPS+YLKNS+NQ                        DR+GRF ++Q
Sbjct: 22  VLAKQAELGVEVAEIPSYYLKNSDNQ------------------------DRKGRFAEKQ 57

Query: 426 KFSHNDISEKPALNKKKPTLLEKLLSADIKRDKSHLLQVFRFMVMNSFFKDSPDKPLIYP 485
           KF+  D SE P+L K+KPTLL+KLLS+D+KRDKSHLLQV RFMVMNSFF+  PDK L YP
Sbjct: 58  KFADKDFSESPSLKKRKPTLLQKLLSSDVKRDKSHLLQVLRFMVMNSFFRHIPDKALRYP 117

Query: 486 SVKVKEIGSEGGCEEKHLHTGKD 508
           SV+VKE GSE   E+KHLHTGKD
Sbjct: 118 SVEVKEKGSEVSGEKKHLHTGKD 140


>Glyma14g09270.1 
          Length = 139

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 91/120 (75%), Gaps = 7/120 (5%)

Query: 171 VRPQIDPNEKKLVPPNVNTNAFVSSPFPS-QQLQGNGSAPVNPHLAQPHHTNNSQPSAFM 229
           VRPQIDPNEK L PPNV+ N+FVSS   S QQLQGN S  +NP+LA   HTNNSQP AFM
Sbjct: 1   VRPQIDPNEKNLNPPNVSANSFVSSSPFSSQQLQGNTSGSLNPNLA---HTNNSQPPAFM 57

Query: 230 NSNSQEKPNSNIKANVPNSNWKGPPSKNFKNKPSRXXXXXXXXKSKFVNINNGKRGNGFP 289
               QEKPNSNIK NVPNSNWKG PSKNFKNKP+R        KSKF ++NNGK+G+GFP
Sbjct: 58  ---KQEKPNSNIKTNVPNSNWKGSPSKNFKNKPNRGGFQAGFQKSKFHDVNNGKKGSGFP 114