Miyakogusa Predicted Gene

Lj3g3v0950580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0950580.1 Non Chatacterized Hit- tr|G7JC10|G7JC10_MEDTR
Putative ribosome biogenesis GTPase RsgA OS=Medicago
t,88.01,0,seg,NULL; P-loop containing nucleoside triphosphate
hydrolases,NULL; Nucleic acid-binding
proteins,N,NODE_48441_length_1250_cov_77.383202.path1.1
         (374 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g01130.1                                                       640   0.0  
Glyma11g37180.1                                                       631   0.0  
Glyma08g28490.1                                                        90   5e-18
Glyma09g06090.1                                                        75   1e-13

>Glyma18g01130.1 
          Length = 473

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/382 (82%), Positives = 332/382 (86%), Gaps = 11/382 (2%)

Query: 1   MRVVLPSG--------GVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFQ 52
           MRV++P          GVE+LCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVF 
Sbjct: 93  MRVIVPENDEPSGSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFH 152

Query: 53  RNSEILDPPVANVDHLLVLFSLQNPKPEPFTLTRFLVEAESTGIPLTLALNKIELVDNET 112
           R SEILDPPVANVD LLVLFSL+ PKPEPFTLTRFLVEAESTGIPLTLALNK ELVDNE 
Sbjct: 153 RTSEILDPPVANVDQLLVLFSLEQPKPEPFTLTRFLVEAESTGIPLTLALNKTELVDNEI 212

Query: 113 VASWKARVRDWGYDPILCSVESVHNLDLLAFKLRDQTTVIVGPSGVGKSSLINALRTNPR 172
           ++SWKAR+R WGY+P+ CSVES H LDLL FKLRDQTTVIVGPSGVGKSSLINALR+NP 
Sbjct: 213 ISSWKARLRSWGYEPVFCSVESGHGLDLLGFKLRDQTTVIVGPSGVGKSSLINALRSNP- 271

Query: 173 VCETAEGENWFEPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFN 232
               AEGENWFEP+LGSKW EDQRV EVSTRSGRGKHTTRHVSLLPLS GG+LADTPGFN
Sbjct: 272 -SNAAEGENWFEPVLGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLADTPGFN 330

Query: 233 QPSLMKVTKQSLAETFPEIRKMLSANESAKCSFNNCLHLGEPGCIVKGDWERYSFYFQLL 292
           QPSL+KVTKQSLA+TFPEIRKMLSA+E  KCSFNNCLHLGEPGCIVKGDWERYS+YFQLL
Sbjct: 331 QPSLLKVTKQSLAQTFPEIRKMLSASEIEKCSFNNCLHLGEPGCIVKGDWERYSYYFQLL 390

Query: 293 DEIRIREEFQLRTFGTKRESDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSF-LXXX 351
           DEIRIREEFQLRTFGTKRE DVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQS      
Sbjct: 391 DEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELD 450

Query: 352 XXXXXXXXXXXXPVLRALRNEN 373
                       P+LRALRNEN
Sbjct: 451 DDDDNLLDEENDPILRALRNEN 472


>Glyma11g37180.1 
          Length = 475

 Score =  631 bits (1628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/355 (85%), Positives = 324/355 (91%), Gaps = 10/355 (2%)

Query: 1   MRVVLPSG--------GVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFQ 52
           MRV++P          GVE+LCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFQ
Sbjct: 97  MRVIVPENDEPSGSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFQ 156

Query: 53  RNSEILDPPVANVDHLLVLFSLQNPKPEPFTLTRFLVEAESTGIPLTLALNKIELVDNET 112
           R SEILDPPVANVD LLVLFSL++PKPEPFTLTRFLVEAESTGIPL LALNK ELVDNE 
Sbjct: 157 RTSEILDPPVANVDQLLVLFSLEHPKPEPFTLTRFLVEAESTGIPLMLALNKTELVDNEI 216

Query: 113 VASWKARVRDWGYDPILCSVESVHNLDLLAFKLRDQTTVIVGPSGVGKSSLINALRTNPR 172
           ++SWKAR+R WGY+P+ CSVES H LDLL +KLRDQTTVIVGPSGVGKSSLINALR+NP 
Sbjct: 217 ISSWKARLRSWGYEPVFCSVESGHGLDLLGYKLRDQTTVIVGPSGVGKSSLINALRSNP- 275

Query: 173 VCETAEGENWFEPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFN 232
             + AEG+NWFEPILGSKW EDQRV EVSTRSGRGKHTTRHVSLLPLS GG+LADTPGFN
Sbjct: 276 -SDAAEGDNWFEPILGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLADTPGFN 334

Query: 233 QPSLMKVTKQSLAETFPEIRKMLSANESAKCSFNNCLHLGEPGCIVKGDWERYSFYFQLL 292
           QPSL+KVTKQSLA+TFPEIRKMLSANE+ KCSFNNCLHLGEPGCIVKGDWERYS+YFQLL
Sbjct: 335 QPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCIVKGDWERYSYYFQLL 394

Query: 293 DEIRIREEFQLRTFGTKRESDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSF 347
           DEIRIREEFQLRTFGTKRE DVRLKMGDMGVQQAEPRLEPKKHRRQSRK INQS 
Sbjct: 395 DEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKSINQSI 449


>Glyma08g28490.1 
          Length = 73

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/52 (82%), Positives = 45/52 (86%)

Query: 17 RALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFQRNSEILDPPVANVDHL 68
          R LLKKIKRRVMVGDKVLVGSIDWV+RRGMIENVF R   IL+PPV NVD L
Sbjct: 22 RVLLKKIKRRVMVGDKVLVGSIDWVNRRGMIENVFHRTFNILNPPVVNVDQL 73


>Glyma09g06090.1 
          Length = 107

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 41/57 (71%)

Query: 13 LCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFQRNSEILDPPVANVDHLL 69
          LC    +  +     MV DKVLVGSIDWVD RGMIENVF + SEILDPP+AN+D LL
Sbjct: 28 LCRTTFMGLRFSTWAMVRDKVLVGSIDWVDCRGMIENVFHQTSEILDPPIANIDQLL 84