Miyakogusa Predicted Gene

Lj3g3v0950230.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0950230.1 Non Chatacterized Hit- tr|C0HIA6|C0HIA6_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,62.5,5e-16,SLT,Lytic
transglycosylase-like, catalytic; Lysozyme-like,Lysozyme-like domain;
no description,NULL,CUFF.41785.1
         (422 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g17590.1                                                       358   4e-99
Glyma06g21390.1                                                       105   1e-22
Glyma01g30510.1                                                        72   1e-12

>Glyma08g17590.1 
          Length = 304

 Score =  358 bits (920), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 200/325 (61%), Positives = 230/325 (70%), Gaps = 33/325 (10%)

Query: 60  AVSKIVIGRHFDSEIDPGMICAIAELESDRQLLVMRSGHKSKEPTVGLMQILPKTAEWLM 119
           AV+ I+I +HF SEIDP MICAIAELESDRQLLVM S HKSKEPTVGLMQ+LPKT EWLM
Sbjct: 1   AVADIIITKHFHSEIDPDMICAIAELESDRQLLVMNSRHKSKEPTVGLMQLLPKTTEWLM 60

Query: 120 SELGYRSYSAEGNIQFLCKPFISVYFGAAYIKWLSNFDNKKRSEEFIVRAYKGGTKKATH 179
            +      ++ G    LC     +    +  +  S     KRSEEFIVRAYKGGTKKATH
Sbjct: 61  RK------ASPGAAVKLC--LGDLLVMGSNPETASLHMQGKRSEEFIVRAYKGGTKKATH 112

Query: 180 KSTLSFWKSYLSIKGSFPSRKSVDDGPPLSNASAPVHCPAGSPIPSLENSKDASVDTYWD 239
           KSTL +W  YLS+K SF SRKSVDD     N S P H     P+PSLENSKDASVDTYWD
Sbjct: 113 KSTLRYWNCYLSVKESFRSRKSVDD-----NVSPPAH---SHPLPSLENSKDASVDTYWD 164

Query: 240 SRASPEDMEAMWNHPEIHKVWSKSKQKQGKVRFTHDEKKRPYLSRVEIKAVADIVLFKYL 299
           SR +PEDMEAMWNH E+ K W+KSKQKQGKVRF HDEKKRPYLSRVE+KA+ADI+L+KYL
Sbjct: 165 SRVAPEDMEAMWNHLEVRKEWNKSKQKQGKVRFAHDEKKRPYLSRVEMKAIADIILYKYL 224

Query: 300 NTLKIKSRVLCAIAEVA-----STRFVDGVEGRPGIMGID-YSTA-----FWLYLELGHR 348
           +T+KIKS  +  +  +      S RF+        IM  + YS       FW   ELG+R
Sbjct: 225 STVKIKSFRVIKLTNLQRRKEISIRFLS---RHYEIMKFNKYSKMPLKRDFW---ELGYR 278

Query: 349 AYKLESADDLNSPFVSMYFGAAYVA 373
           AY+LES DDLN+PFVSMYFGAAYVA
Sbjct: 279 AYRLESVDDLNNPFVSMYFGAAYVA 303



 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 23/155 (14%)

Query: 6   SYWDDCVDPEDLEAMWNVPEVRTEWLKAGEARCQKVHLSRDPDGQPYLTQTEMRAVSKIV 65
           +YWD  V PED+EAMWN  EVR EW K+ + +  KV  + D   +PYL++ EM+A++ I+
Sbjct: 161 TYWDSRVAPEDMEAMWNHLEVRKEWNKSKQKQG-KVRFAHDEKKRPYLSRVEMKAIADII 219

Query: 66  IGRHFDS-EIDPGMICAIAELES---------DRQLLVMRSGHKSKEPTVGLMQILPKTA 115
           + ++  + +I    +  +  L+           R   +M+    SK P         K  
Sbjct: 220 LYKYLSTVKIKSFRVIKLTNLQRRKEISIRFLSRHYEIMKFNKYSKMPL--------KRD 271

Query: 116 EWLMSELGYRSYSAEGNIQFLCKPFISVYFGAAYI 150
            W   ELGYR+Y  E ++  L  PF+S+YFGAAY+
Sbjct: 272 FW---ELGYRAYRLE-SVDDLNNPFVSMYFGAAYV 302


>Glyma06g21390.1 
          Length = 131

 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 66/101 (65%), Gaps = 21/101 (20%)

Query: 200 KSVDDGPPLSNASAPVHCPAGSPIPSLENSKD------------ASVDTYWDSRASPEDM 247
           KS DD     N S P H     P+PSLENSK              SVDTYW SR +PEDM
Sbjct: 1   KSGDD-----NVSPPSH---SHPLPSLENSKGHFLSPHSPFLAYGSVDTYWHSRVAPEDM 52

Query: 248 EAMWNHPEIHKVWSKSKQKQGKVRFTHDEKKRPYLSRVEIK 288
           EAMWNH E+ K W+KSKQKQGKVRF HDE KRPYLSRVE+K
Sbjct: 53  EAMWNHLEVRKEWNKSKQKQGKVRFAHDE-KRPYLSRVEMK 92



 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 6   SYWDDCVDPEDLEAMWNVPEVRTEWLKAGEARCQKVHLSRDPDGQPYLTQTEMR--AVSK 63
           +YW   V PED+EAMWN  EVR EW K+ + +  KV  + D + +PYL++ EM+  + + 
Sbjct: 41  TYWHSRVAPEDMEAMWNHLEVRKEWNKSKQKQ-GKVRFAHD-EKRPYLSRVEMKYFSTNN 98

Query: 64  IVIGRHF 70
             IG  F
Sbjct: 99  FYIGNSF 105


>Glyma01g30510.1 
          Length = 105

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 50/74 (67%), Gaps = 12/74 (16%)

Query: 159 KKRSEEFIVRAYKGGTKKATHKSTLSFWKSYLSIKGSFPSRKSVDDG-PPLSNASAPVHC 217
           +KRSEEFIVRAYKGGTKK THKSTL +W  YLS+  +  + KS DD  PPL+ +      
Sbjct: 11  RKRSEEFIVRAYKGGTKKETHKSTLCYWNCYLSMIST--TVKSGDDNVPPLARS------ 62

Query: 218 PAGSPIPSLENSKD 231
               P+P LENSK+
Sbjct: 63  ---HPLPLLENSKE 73