Miyakogusa Predicted Gene

Lj3g3v0931330.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0931330.1 tr|A9TLA7|A9TLA7_PHYPA DNA polymerase
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_60547
PE=,46.3,1e-18,Ribonuclease H-like,Ribonuclease H-like domain;
seg,NULL; DNA POLYMERASE ALPHA CATALYTIC SUBUNIT,NUL,CUFF.41631.1
         (448 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g39430.1                                                       207   1e-53

>Glyma01g39430.1 
          Length = 1434

 Score =  207 bits (528), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 126/187 (67%), Gaps = 3/187 (1%)

Query: 1   MADDDGSRKRRPTRGPESTARSQALERLKARLGGGRRSDPAGPQIKLENPIYDTVPEDEY 60
           MADD+    RR  RGPE+T RS+ALERLKAR+ GGRRSD  GPQI+LENP+YDTVPEDEY
Sbjct: 1   MADDEPVSGRRRPRGPEATERSKALERLKARIHGGRRSDATGPQIRLENPVYDTVPEDEY 60

Query: 61  NALVAKRREQAQDFIVXXXXXXXXXXXXXXXWSKAGYTLXXXXXXXXXXXKAEKPKRKKD 120
           NALVAKRREQA+ FIV               WS+AG+ L              K   KKD
Sbjct: 61  NALVAKRREQARSFIVDDEGLGYGDEGEEEDWSQAGFNLSSGESEDESERPKRKKVEKKD 120

Query: 121 PQIKRPXXXXXXXXXXXXMIGAQRLSSMFTSSNFKKNRDEKASESIVDDVIAEFAPDEND 180
           PQ KRP            M+G QRLSSMFTSS FKK+RD+KASESIVDDVIAEFA DE D
Sbjct: 121 PQPKRP---SSSLSAAAAMMGGQRLSSMFTSSVFKKSRDDKASESIVDDVIAEFAADETD 177

Query: 181 RLRRRKA 187
           RLRR++A
Sbjct: 178 RLRRKRA 184



 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 118/168 (70%), Gaps = 11/168 (6%)

Query: 259 QAQPETMQIDDFPSNEGLSEDKVVKDIEMEEKPALKKEVFTLNAKISRE--EDPTLSAAT 316
           +A    ++ DD   NEG+ E+K +K  E+E     KKEVFTLNAK+  E  EDP+LSA T
Sbjct: 183 RANAPVVESDDCKINEGIVEEKEMKKAEIEVISGGKKEVFTLNAKVKEEDEEDPSLSA-T 241

Query: 317 AGWQAAKRSTGGGGEINGAVSKDGLS----AEFNLEADGSLPFFILDAHEEYYGANMGTV 372
           AGW+      GG      A SKD L     +E +LE DGS  F+ILDA+EE+YG N GT+
Sbjct: 242 AGWKEVMSGAGGVD----ADSKDALQNQQHSELDLEKDGSFFFYILDAYEEFYGENRGTL 297

Query: 373 YLFGKVKTGDLYQSCCVVVKNMQRCVYAIPSRPLHYTDEIMNLEKDVQ 420
           YLFGKVKTGDLYQSCC++VKNMQRC+YA+PS  LH T+E+M+LE+DVQ
Sbjct: 298 YLFGKVKTGDLYQSCCIIVKNMQRCIYAVPSLSLHRTEEMMSLERDVQ 345