Miyakogusa Predicted Gene

Lj3g3v0930320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0930320.1 tr|G7K6L7|G7K6L7_MEDTR DNA polymerase OS=Medicago
truncatula GN=MTR_5g017060 PE=3 SV=1,85.52,0,DNA/RNA polymerases,NULL;
zf-DNA_Pol,Zinc finger, DNA-directed DNA polymerase, family B, alpha;
DNA_,CUFF.41632.1
         (359 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g39430.1                                                       558   e-159
Glyma05g10080.1                                                       336   2e-92
Glyma07g33750.1                                                       215   7e-56
Glyma09g08950.1                                                        77   4e-14

>Glyma01g39430.1 
          Length = 1434

 Score =  558 bits (1437), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/359 (75%), Positives = 294/359 (81%), Gaps = 35/359 (9%)

Query: 1    MRNGQVPLEKYVITKTLTKDPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICY 60
            MRNGQV LEKYVITKTLTK PEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICY
Sbjct: 1111 MRNGQVALEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICY 1170

Query: 61   EQGGSSGSAKGIAQRARHPDELKQEKGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERL 120
            EQGGS GSA GIAQRARHPDELK+++GTWLIDIDYYLSQQIHPVVSRLCA IQGTSPERL
Sbjct: 1171 EQGGSPGSAAGIAQRARHPDELKRDQGTWLIDIDYYLSQQIHPVVSRLCAPIQGTSPERL 1230

Query: 121  ADCLGLDTSKFQHKSSEASSVDPTSSLMFAADDEERYQGCEPLVLSCPSCSGTIDCPPVF 180
            ADCLGLD+SKF HKSSEA + D  S L F ADDEER                        
Sbjct: 1231 ADCLGLDSSKFHHKSSEALNDDSASPLSFVADDEER------------------------ 1266

Query: 181  KSVCLSVNEKPSSSGTEESDYNFWRKLCCPKYQENGVGRISPAMIANQVKMQAEKFVLMY 240
                    ++P+S   EE++YNFWRKLCCPK  +    +ISP MIANQVK QAE+F+LMY
Sbjct: 1267 --------QRPTSVAPEEAEYNFWRKLCCPKCPD---VKISPVMIANQVKRQAERFILMY 1315

Query: 241  YRGSLMCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLYRKYTEADLYKQLSYFC 300
            YRG L+CDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRL RKYTEADLYKQLSYFC
Sbjct: 1316 YRGLLVCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLVRKYTEADLYKQLSYFC 1375

Query: 301  HVFDTASCIEKLEEKSRIPVEKELIKIRPIVDPVASTVQKMRDRCAYGWVKLEDLVISI 359
            HVFDT SCIEK+E KSRIP+EKELIKIR ++   AST Q++RDRCA+GWVKLE+LVIS+
Sbjct: 1376 HVFDTVSCIEKMEAKSRIPIEKELIKIRAVIKSAASTAQEIRDRCAFGWVKLENLVISV 1434


>Glyma05g10080.1 
          Length = 490

 Score =  336 bits (862), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 198/393 (50%), Positives = 229/393 (58%), Gaps = 125/393 (31%)

Query: 1   MRNGQVPLEKYVITKTLTKDPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICY 60
           MRN QVPLE+YVITKTL K PEAYPDAKNQPHV  AQRLKQQG+SSGCSVGDTIPYIICY
Sbjct: 189 MRNRQVPLERYVITKTLAKPPEAYPDAKNQPHV--AQRLKQQGHSSGCSVGDTIPYIICY 246

Query: 61  EQGGSSGSAKGIAQRARHPDELKQEKGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERL 120
           EQ                                      IHPV+SRLCASIQG SP+RL
Sbjct: 247 EQ--------------------------------------IHPVLSRLCASIQGKSPKRL 268

Query: 121 ADCLGLDTSKFQHKSSEASSVDPTSSLMFAADDEERYQGCEPLVLSCPSCSGTIDCPPVF 180
           A+CLGL +SKF HKS+EA + D TSS + A DD E                         
Sbjct: 269 ANCLGLHSSKFHHKSNEALNNDSTSSFLSAVDDNE------------------------- 303

Query: 181 KSVCLSVNEKPSSSGTEESDYNFWRKLCCPKYQENGVGRISPAMIANQ------------ 228
                  +E+P+S   EES++NFW KLC PK  +    +ISPAMIA+Q            
Sbjct: 304 -------SERPTSVVMEESNHNFWHKLCRPKCSD---VKISPAMIAHQNFIPENILTVLH 353

Query: 229 -----VKMQAEKFVLMYYRG---------------SLMCDDETCKHTTRSISLRLVGDSE 268
                VK Q E+FVL+YY+G               S   +DETCKH TR           
Sbjct: 354 DTSCQVKRQVERFVLLYYKGLMYYIEFHTNFLCLISFSVNDETCKHPTRR---------- 403

Query: 269 RGTVCPNYPRCNGRLYRKYTEADLYKQLSYFCHVFDTASCIEKL--EEKSRIPVEKELIK 326
             TVCPNY  CNGRL RKYTEADLYK+LSYF HVFDT SCI KL  E KSR+ +EK LIK
Sbjct: 404 --TVCPNYSHCNGRLVRKYTEADLYKKLSYFFHVFDTVSCIAKLTVEAKSRMLIEK-LIK 460

Query: 327 IRPIVDPVASTVQKMRDRCAYGWVKLEDLVISI 359
           IRP++D  A   QK+RDRCA+GWV+L DLVI++
Sbjct: 461 IRPMIDQAA---QKIRDRCAFGWVRLHDLVITV 490


>Glyma07g33750.1 
          Length = 232

 Score =  215 bits (547), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 107/197 (54%), Positives = 136/197 (69%), Gaps = 23/197 (11%)

Query: 148 MFAADDEERYQGCEPLVLSCPSCSGTIDCPPVFKSVCL--SVNEKPSSSGTEESDYNFWR 205
           ++      +Y+GCEPLVLS PS SGT D PP+FKS+CL  S  ++P++  +EE++YNF  
Sbjct: 50  IYGEASNHKYRGCEPLVLSYPSYSGTFDYPPIFKSICLLGSERQRPTNVASEEAEYNFL- 108

Query: 206 KLCCPKYQENGVGRISPAMIANQVKMQAEKFVLMYYRGSLMCDDETCKHTTRSISLRLVG 265
                            A  A+++ +   +FVLMYYRG L+CDDETCKHT RSI+ RLV 
Sbjct: 109 -----------------AFKASKILL---RFVLMYYRGLLVCDDETCKHTMRSINHRLVC 148

Query: 266 DSERGTVCPNYPRCNGRLYRKYTEADLYKQLSYFCHVFDTASCIEKLEEKSRIPVEKELI 325
           DS+RGTVCPNYPR NGRL RKY +ADLYK  SYF HVFDT  CIEK++ KSRIP+EKELI
Sbjct: 149 DSKRGTVCPNYPRYNGRLVRKYIKADLYKLFSYFFHVFDTVFCIEKMKAKSRIPIEKELI 208

Query: 326 KIRPIVDPVASTVQKMR 342
           K R ++   AST Q+ +
Sbjct: 209 KTRAVIKSAASTAQETK 225


>Glyma09g08950.1 
          Length = 248

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 47/67 (70%), Gaps = 5/67 (7%)

Query: 165 LSCPSCSGTIDCPPVFKSVCL--SVNEKPSSSGTEESDYNFWRKLCCPKYQENGVGRISP 222
           L  P+CSGT DCP VFKS+CL  S  ++P+S   EE++YNFW KLCC K  +    +ISP
Sbjct: 169 LVMPTCSGTFDCPLVFKSICLLGSERQRPTSVALEEAEYNFWHKLCCHKCLDV---KISP 225

Query: 223 AMIANQV 229
            MIANQV
Sbjct: 226 VMIANQV 232