Miyakogusa Predicted Gene

Lj3g3v0896950.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0896950.1 Non Chatacterized Hit- tr|C0HDR7|C0HDR7_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,39.89,3e-16,coiled-coil,NULL; seg,NULL,CUFF.41621.1
         (357 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g42460.1                                                       317   9e-87

>Glyma15g42460.1 
          Length = 649

 Score =  317 bits (813), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 186/324 (57%), Positives = 208/324 (64%), Gaps = 44/324 (13%)

Query: 37  FWSTQHANDSLVPEEKSKPIYDE-PSSQHMSSKHDRVHLENDQVPKKINTNKGGTTQTHT 95
           FWSTQHA +SLV E+KSKPI+DE PSS H+S KHDR+  EN+Q+PK +  NK        
Sbjct: 367 FWSTQHAKESLVAEDKSKPIFDEEPSSHHISPKHDRILPENEQLPKNVGPNK-------- 418

Query: 96  VKSSVHGKPHKPDTKSSKDFEINFFQDKDNANQRRVSNMENNTNFQDQAFNTFVAEFDTT 155
                             DFEIN F+DKD          E+ TNFQ+QAFNTFVAEFDTT
Sbjct: 419 -----------------VDFEINLFKDKDRVR-------ESTTNFQNQAFNTFVAEFDTT 454

Query: 156 KLNSGLGNKSXXXXXXXXXXXXXXXQLKEANLEKAEITSKYEKLSAICRSQRQELQDLKQ 215
            LNSGL NK                QLKEANLEKAEITSKYEKLSAICRSQRQELQDLKQ
Sbjct: 455 NLNSGLSNKPEREQALEAEVEKLKEQLKEANLEKAEITSKYEKLSAICRSQRQELQDLKQ 514

Query: 216 ALATRTPSQSREGLKTSPGITSSPSELQRQK-IGGTAESELKTPSSEPKSWQAFPEEPGP 274
           AL  RTPS  R+GLKTSP +TSS S         G    +L+      KSW AFPEEP  
Sbjct: 515 ALTARTPSPIRDGLKTSPAVTSSASASAVVFVTHGCVSLQLQN-----KSWHAFPEEPQQ 569

Query: 275 VKSLSADNATKSVRTKNGPQNKQPTQLASDFDSWGFGADKFSAVRAGSPQMPRPGE-GSK 333
            KS SA+N +KSVR KNG QNKQP  LA+DFDSWGFG+D FSAV AGSP M RP   G+K
Sbjct: 570 QKSFSAENTSKSVRVKNGQQNKQPVALATDFDSWGFGSDSFSAVPAGSPHMQRPSSAGTK 629

Query: 334 AQLFGNPKASESKSASQPAGWAGF 357
           +Q FG      +KS SQPAGWAGF
Sbjct: 630 SQAFG----EANKSTSQPAGWAGF 649