Miyakogusa Predicted Gene

Lj3g3v0883710.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0883710.1 Non Chatacterized Hit- tr|I1I2F3|I1I2F3_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,30.9,1e-18,seg,NULL; Rad21_Rec8,Rad21/Rec8-like protein,
C-terminal, eukaryotic; no description,Rad21/Rec8-like,CUFF.41591.1
         (347 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g16090.1                                                       134   1e-31
Glyma18g48020.1                                                        59   6e-09
Glyma19g25040.1                                                        58   1e-08
Glyma16g06470.1                                                        58   2e-08

>Glyma08g16090.1 
          Length = 629

 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/233 (42%), Positives = 125/233 (53%), Gaps = 41/233 (17%)

Query: 1   MRDALNNPRNIIRKRRDLPGSSLGAWKLNNSQRKENMFDQPLITGLCQDLLDISQTDYIR 60
           MR ALNN R+I+RKRRD+P SSLG WKLNN +RKE++FDQPL       L +IS      
Sbjct: 363 MRSALNNTRDILRKRRDVPSSSLGTWKLNNIRRKEHIFDQPLFLYHVT-LFNIS------ 415

Query: 61  SRPHLIISEEDNADNGCGVTRTPPTNQIPEEPRAAT----------------PPVTASDM 104
              HL+I EED+AD   G     PTN+ PEE  AAT                 P+ A+D 
Sbjct: 416 ---HLVIFEEDHADVRMGEETLSPTNEPPEESLAATNEPPEEPIAATNQPPEEPIAATDH 472

Query: 105 EIEHP--ATNQIPEEPRAATPPVNALDLEIEQLRSVAATPSPTIPAHNVDIELNIEGDHR 162
             E P   T+Q  EE   AT PV   D+++E  R+VA TP  T  A +       E D+ 
Sbjct: 473 PHEEPIATTDQTSEEAITATSPVT--DMQVEHNRNVAVTPPATAQAPH-------EDDYT 523

Query: 163 SPVGRDNMTPVSAHRLRSVSVSPLRTNNASETVQTPDVGTSLGAHGSE-METP 214
           SP  RD     S+H   ++S++ L TN ASE + T D   S G HG E M+TP
Sbjct: 524 SPNRRDCFNMPSSH---NISIASLNTNIASERMHTLDYAVSPGVHGLEAMQTP 573


>Glyma18g48020.1 
          Length = 1153

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 10/89 (11%)

Query: 253  ASSQGTSRTTGTLSVRTRATAQYLKAHSPISPILEDPAV----DLSLNKILEGKSRKISA 308
            + ++GT+      S RTRA A YL+       + +   +    +L LN +L GK+RK ++
Sbjct: 1061 SCAEGTNLENSGWSSRTRAVANYLQT------VFDKEDLHGRKELHLNNLLVGKTRKEAS 1114

Query: 309  RMFYEVLVLKTHGLIDVHQKEPYDDISLK 337
            RMF+E LVLKT   + V Q +P+ ++S+K
Sbjct: 1115 RMFFETLVLKTRDYVHVEQTKPFANVSIK 1143


>Glyma19g25040.1 
          Length = 105

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 247 MDNNTPASSQGTSRTTGTLSVRTRATAQYLKAHSPISPILEDPAVDLSLNKILEGKSRKI 306
           MD  T +     S      S RTR  A  L  H       +     ++ +++  G++RK 
Sbjct: 1   MDEETNSRGTNESELLAGWSGRTREVASCL--HQSFLHARKQREDTVNFSQVFGGRARKE 58

Query: 307 SARMFYEVLVLKTHGLIDVHQKEPYDDISLKLMPSLSNAKL 347
           SA +FYEVLVLKT G +DV Q + Y DI++  +P L    L
Sbjct: 59  SALLFYEVLVLKTTGYVDVEQNKAYGDIAISRLPKLDQTFL 99


>Glyma16g06470.1 
          Length = 536

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 38/55 (69%)

Query: 293 LSLNKILEGKSRKISARMFYEVLVLKTHGLIDVHQKEPYDDISLKLMPSLSNAKL 347
           ++ +++  G++RK SA +FYEVLVLKT G +DV Q+E Y DI++  +P L    L
Sbjct: 475 INFSQVFGGQARKESALLFYEVLVLKTSGYVDVKQQEAYGDIAICRLPKLDQIFL 529