Miyakogusa Predicted Gene

Lj3g3v0828240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0828240.1 tr|B9MX86|B9MX86_POPTR F-box family protein
OS=Populus trichocarpa GN=POPTRDRAFT_796629 PE=4
SV=1,28.08,2e-18,seg,NULL; no description,NULL,CUFF.41573.1
         (390 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g11470.1                                                       186   3e-47
Glyma02g04930.1                                                        63   6e-10

>Glyma10g11470.1 
          Length = 368

 Score =  186 bits (473), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/314 (42%), Positives = 167/314 (53%), Gaps = 35/314 (11%)

Query: 45  DWSQLPAELRHLISQRLNSPPSLP-RFRSVCSTWRHSSASSXXXXXXXXXXXXXLXXXXX 103
           DWS+LP +L H ISQ L   P    RFRSVCS+WR S+  S                   
Sbjct: 3   DWSELPKDLLHKISQLLLESPLYLLRFRSVCSSWRSSTPPSPFNPSISLTNT-------- 54

Query: 104 XXXXXFSLTKRTVVLIXXXXXXXXXXXXX-WLVKIGEDLCDGDRTRTRLWHPLFRGP-HF 161
                FSL+ RT++L+              WLVK+     D   +  RL+HPL R P   
Sbjct: 55  -----FSLSHRTLLLLNPNSNPNPNPRPRPWLVKLS---LDPHASTARLFHPLSRFPMKL 106

Query: 162 PIYAMRVLDFYNLSVLHIGNEFNLXXXXXXXXXXDSLYMEKVVAATTYQGKQEVFVLLTI 221
           P +A   LD + L  L +G EF L          DSLY+EK+V       +++ F LLTI
Sbjct: 107 PRFA---LDLFTLPALDLGREFLLTNTRHTR---DSLYIEKLVFLPLTH-RKDRFALLTI 159

Query: 222 HISGKLALFRSGDESWRIIPDMPTPYDDVCVFNGRHFAVDGTGRTVVVGLDSALDLVVVA 281
           H+SGKLALFRSG++ W +IPDMPTPYDDVCVF G  +  D  GRTV V  D    L + A
Sbjct: 160 HVSGKLALFRSGEDGWTVIPDMPTPYDDVCVFKGNLYGADSNGRTVRVRPDDG-GLTLAA 218

Query: 282 EPVFGGDKKFLVESDGELLLVDKHMSSNWFCXXXXXXXXXXXXXXXXXXXXVYRVGWERA 341
           EPVFGGDKKFLVES+G LLLVD ++S  + C                    V  +GWER 
Sbjct: 219 EPVFGGDKKFLVESEGALLLVDMYLSY-YSC-------TQGLFHEDFDEEDVAGMGWERT 270

Query: 342 VSFDVYRLYQKVKR 355
           V FDV+RL ++ K+
Sbjct: 271 VKFDVFRLDEEGKK 284


>Glyma02g04930.1 
          Length = 379

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 217 VLLTIHISGKLALFRSGDESWRIIPDMPTPYDDVCVFNGRHFAVDGTGRTVVVGLDSALD 276
           V   I + GKL   + GDE W ++ +    YDDV VF G+ +  D  G    +   S+L 
Sbjct: 177 VACCIFLEGKLGFMKHGDEKWTLVDNKNFFYDDVIVFKGQFYVTDDRGTISWIDT-SSLK 235

Query: 277 LVVVAEPVFG-GDKKFLVESDGELLLVDKHMSS 308
           LV  + P+ G GDKK LVES G L +VD++  S
Sbjct: 236 LVQFSPPLCGLGDKKHLVESCGSLYVVDRYYES 268