Miyakogusa Predicted Gene

Lj3g3v0826180.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0826180.1 tr|G7IWV6|G7IWV6_MEDTR E3 ubiquitin-protein
ligase RNF181 OS=Medicago truncatula GN=MTR_3g031000
PE=,56.45,0.00000000006,ZF_RING_2,Zinc finger, RING-type; no
description,Zinc finger, RING/FYVE/PHD-type; seg,NULL;
RING/U-b,CUFF.41562.1
         (217 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g11590.1                                                        53   2e-07

>Glyma10g11590.1 
          Length = 156

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/27 (81%), Positives = 24/27 (88%), Gaps = 1/27 (3%)

Query: 147 NCAICFEDFHDVGVRMPCLHMFHESCI 173
            CAIC EDF +VGVRMPCLHMFHE+CI
Sbjct: 65  RCAICLEDF-NVGVRMPCLHMFHENCI 90