Miyakogusa Predicted Gene
- Lj3g3v0826110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0826110.1 tr|I1MJQ7|I1MJQ7_SOYBN DNA topoisomerase 2
OS=Glycine max GN=Gma.43351 PE=3 SV=1,86.8,0,DNA_topoisoIV,DNA
topoisomerase, type IIA, subunit A/C-terminal; Toprim,Toprim domain;
TOPISMRASEII,,CUFF.41569.1
(857 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma15g43170.1 1410 0.0
Glyma10g11610.1 1320 0.0
Glyma18g24230.1 367 e-101
Glyma09g21300.1 91 6e-18
Glyma03g28290.1 80 7e-15
Glyma19g31030.1 80 1e-14
>Glyma15g43170.1
Length = 1472
Score = 1410 bits (3650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/825 (82%), Positives = 734/825 (88%), Gaps = 10/825 (1%)
Query: 13 VANSGILDTLLSWADFKQSKDLKKTDGTKTQRLRGIVKLEDANDAGGRNSDKCTLILTEG 72
VANSGI+DTLLSWADFKQSKDLKK+DGTKTQRLRGIVKLEDANDAGGRNS+KCTLILTEG
Sbjct: 395 VANSGIVDTLLSWADFKQSKDLKKSDGTKTQRLRGIVKLEDANDAGGRNSEKCTLILTEG 454
Query: 73 DSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASNKQIMDNEEIQNIKKILGLQQNKEY 132
DSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREAS+KQIMDNEEIQNIKKILGLQQNKEY
Sbjct: 455 DSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASSKQIMDNEEIQNIKKILGLQQNKEY 514
Query: 133 SNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFHSN 192
++VKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFHSN
Sbjct: 515 TSVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFHSN 574
Query: 193 GTKLSFYSMPEYESWRENLGNNATGWKIKYYKGLGTSTPQEGREYFRDLGKHRKDFVWED 252
GTKLSFYSMPEYESWRE+LGNNATGWKIKYYKGLGTSTPQEGREYFRDL KH+KDFVW+D
Sbjct: 575 GTKLSFYSMPEYESWRESLGNNATGWKIKYYKGLGTSTPQEGREYFRDLDKHKKDFVWDD 634
Query: 253 DYDGSAIEMAFSKKKAEDRKVWIRNFEPGNYRDHVASRINYKDFVNKELILFSRADLQRS 312
+ DG AIEMAFSKKKAEDRK+WIRNFEPG RDH+A INY+DFVNKELIL+SRADLQRS
Sbjct: 635 EQDGGAIEMAFSKKKAEDRKIWIRNFEPGTCRDHMAKYINYRDFVNKELILYSRADLQRS 694
Query: 313 IPSVVDGLKPGQRKILFCSFKKKLFKEIKVGQFIGYVSEHSAYHHGEQSLASTIIGMAQD 372
IPS+VDGLKPGQRKILFCSFKKKL KEIKVGQFIGYVSEHSAYHHGEQSLASTII MAQD
Sbjct: 695 IPSMVDGLKPGQRKILFCSFKKKLSKEIKVGQFIGYVSEHSAYHHGEQSLASTIINMAQD 754
Query: 373 FVGSNNINLLKPNGQFGTRNLGGKDHASSRYIYTELNPITRCLFHENDDKLLEYLNEDGR 432
FVGSNNINLLKPNGQFGTRNLGGKDHAS+RYIYTELN ITRC+FHE+DDKLLEYLNEDGR
Sbjct: 755 FVGSNNINLLKPNGQFGTRNLGGKDHASARYIYTELNTITRCIFHEDDDKLLEYLNEDGR 814
Query: 433 SIEPSWYIPIIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLLNDETMVPMDPWYRG 492
IEP+WYIP+IPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLL+ ETMVPMDPWY+G
Sbjct: 815 CIEPNWYIPVIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLLSGETMVPMDPWYKG 874
Query: 493 FKGIIEKSAKEGGYIVNGTVEEIDEQSFRITELPIRKWTQDYKQFLESITDGSPNVKDPL 552
FKG IE+S KEGGY+VNG+VEEI+EQ+FRITELP+RKWTQDYKQFLESITDGSPN
Sbjct: 875 FKGTIERSPKEGGYVVNGSVEEINEQTFRITELPVRKWTQDYKQFLESITDGSPN----- 929
Query: 553 IEDFRQNGDDAMVDIEIRMKLEKIAMIMQEGLLKKFKLTTTISTSNMHLFDAEGKIKKYE 612
DFRQNGDDA VDIE+RMKLEKI IMQEGLLKKFKLT++IST+NMHLFDAEGKIKKY+
Sbjct: 930 --DFRQNGDDATVDIEVRMKLEKIVGIMQEGLLKKFKLTSSISTNNMHLFDAEGKIKKYD 987
Query: 613 NPEQILEEFFPLRLDYYERRKQYILENFERLLLVLDNKVRFILGVVSGEIVVSNRKKADL 672
NPEQILEEFFPLRL+YYERRK++IL N E+LLL+LDNKVRFILGVV+GEIVVSNRKKA+L
Sbjct: 988 NPEQILEEFFPLRLEYYERRKKHILNNLEQLLLILDNKVRFILGVVNGEIVVSNRKKAEL 1047
Query: 673 LMELQQKGFTPMPKKGKSAEPQVAGAXXXXXXXXXXXXXXXXXXXXXXXKRGDYEYLLSM 732
L+ELQQKGFTPMP+KGKSAEPQVAGA KRGDYEYLLSM
Sbjct: 1048 LIELQQKGFTPMPRKGKSAEPQVAGANDEEEQEDDNNTREQETGSVEGVKRGDYEYLLSM 1107
Query: 733 SIGTLTLESVQXXXXXXXXXXXXXXXXXATPSKSMWMXXXXXXXXXXXXQDGKEAEDEKK 792
SIGTLTLE+VQ ATPSKS+W+ D EAE+E+K
Sbjct: 1108 SIGTLTLEAVQKLLAEKAEKEKEFEILKATPSKSLWLKDLDELENKLDDIDSIEAEEERK 1167
Query: 793 RISQASKRTSTRDLGTKAAKKPPQPRKNTKKTKNA--ESDNSPME 835
R SQA+++TS R + TKAAKKPPQPRK TKK KN E+DNS ME
Sbjct: 1168 RSSQANRKTSNRGV-TKAAKKPPQPRKYTKKAKNVEPENDNSSME 1211
>Glyma10g11610.1
Length = 1490
Score = 1320 bits (3416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/835 (77%), Positives = 706/835 (84%), Gaps = 16/835 (1%)
Query: 13 VANSGILDTLLSWADFKQSKDLKKTDGTKTQRLRGIVKLEDANDAGGRNSDKCTLILTEG 72
VANSGI+DTLLSWADFKQSKDLKK+DGTKTQRLRGIVKLEDANDAGGRNS+KCTLILTEG
Sbjct: 399 VANSGIVDTLLSWADFKQSKDLKKSDGTKTQRLRGIVKLEDANDAGGRNSEKCTLILTEG 458
Query: 73 DSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASNKQIMDNEEIQNIKKILGLQQNKEY 132
DSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREAS+KQIMDNEEIQNIKKILGLQQNKEY
Sbjct: 459 DSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASSKQIMDNEEIQNIKKILGLQQNKEY 518
Query: 133 SNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFHSN 192
++VKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFHSN
Sbjct: 519 TSVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFHSN 578
Query: 193 GTKLSFYSMPEYESWRENLGNNATGWKIKYYKGLGTSTPQEGREYFRDLGKHRKDFVWED 252
GTKLSFYSMPEYESWRE+LGNNA GWKIKYYKGLGTSTPQEGREYF+DL KH+KDFVW+D
Sbjct: 579 GTKLSFYSMPEYESWRESLGNNANGWKIKYYKGLGTSTPQEGREYFQDLDKHKKDFVWDD 638
Query: 253 DYDGSAIEMAFSKKKAEDRKVWIRNFEPGNYRDHVASRINYKDFVNKELILFSRADLQRS 312
+ DG AIEMAFSKKKAEDRK+WIRNFEPG RDH+A INY+DFVNKELIL+SRADLQRS
Sbjct: 639 EQDGGAIEMAFSKKKAEDRKIWIRNFEPGTCRDHMAKYINYRDFVNKELILYSRADLQRS 698
Query: 313 IPSVVDGLKPGQRKILFCSFKKKLFKEIKVGQFIGYVSEHSAYHHGEQSLASTIIGMAQD 372
IPS+VDGLKPGQRKILFCSFKKKLFKEIKVGQFIGYVSEHSAYHHGEQSLASTII MAQD
Sbjct: 699 IPSMVDGLKPGQRKILFCSFKKKLFKEIKVGQFIGYVSEHSAYHHGEQSLASTIINMAQD 758
Query: 373 FVGSNNINLLKPNGQFGTRNLGGKDHASSRYIYTELNPITRCLFHENDDKLLEYLNEDGR 432
FVGSNNINLLKPNGQFGTRNLGGKDHAS+RYIYTEL+ ITRC+FHE+DDKLLEYLNEDGR
Sbjct: 759 FVGSNNINLLKPNGQFGTRNLGGKDHASARYIYTELSTITRCIFHEDDDKLLEYLNEDGR 818
Query: 433 SIEPSWYIPIIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLLNDETMVPMDPWYRG 492
IEP+WYIP+IPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLL+ ETMVPMDPWY+G
Sbjct: 819 CIEPTWYIPVIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLLSGETMVPMDPWYKG 878
Query: 493 FKGIIEKSAKEGGYIVNGTVEEIDEQSFRITELPIRKWTQDYKQFLESITDGSPNVKDPL 552
FKG IE+S KEGGYIVNG+VEEI+E +FRITELPIRKWTQDYKQFLESITDGSPNVKDPL
Sbjct: 879 FKGTIERSPKEGGYIVNGSVEEINEHNFRITELPIRKWTQDYKQFLESITDGSPNVKDPL 938
Query: 553 IEDFRQNGDDAMVDIEIRMKLEKIAMIMQEGLLKKFKLTTTISTSNMHLFDAEGKIKKYE 612
I+DFRQNGDDA V+IE+RMKLEKI IMQEGLLKKF ++ + +GK++
Sbjct: 939 IDDFRQNGDDATVNIEVRMKLEKIVGIMQEGLLKKFNSHPLLAQTTCIYLMQKGKLRNMT 998
Query: 613 NPEQILEEFFP-----LR----LDYYERRKQYILENFERLLLVLDNKVRFILGVVSGEIV 663
+ L+ F P +R LD +IL N ERLLL+LDNK RFILGVV+GEI+
Sbjct: 999 IQNKFLKSFSPSGWSIMREGRSLDSKPSINNHILNNLERLLLILDNKARFILGVVNGEII 1058
Query: 664 VSNRKKADLLMELQQKGFTPMPKKGKSAEPQVAGAXXXXXXXXXXXXXXXXXXXXXXXKR 723
VSNRKKADLL+ELQ KGFTPMP+KGKSAEPQVAGA K
Sbjct: 1059 VSNRKKADLLIELQHKGFTPMPRKGKSAEPQVAGA---NEDQEDDNTREQETESVEVAKG 1115
Query: 724 GDYEYLLSMSIGTLTLESVQXXXXXXXXXXXXXXXXXATPSKSMWMXXXXXXXXXXXXQD 783
GDYEYLLSMSIGTLTLE+VQ TPSKS+W+ D
Sbjct: 1116 GDYEYLLSMSIGTLTLEAVQKLLAEKAEKEKEFKILKETPSKSLWLKDLDELEKKLDDID 1175
Query: 784 GKEAEDEKKRISQASKRTSTRDLGTKAAKKPPQPRKNTKKTKNA--ESDNSPMET 836
EAE+E+KR SQA+++ T++ TKAAKKPPQPRK TKK KN E+DNS ME
Sbjct: 1176 SIEAEEERKRSSQANRK--TKEAFTKAAKKPPQPRKYTKKAKNVEPENDNSSMEV 1228
>Glyma18g24230.1
Length = 219
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/260 (71%), Positives = 203/260 (78%), Gaps = 41/260 (15%)
Query: 434 IEPSWYIPIIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLLNDETMVPMDPWYRGF 493
+ P YIP+IPLVLVNGS+ IGTG SSYIPNYNPRDIIANVRRLL+ ETMVPMDPWY+GF
Sbjct: 1 VRPHRYIPVIPLVLVNGSQRIGTGCSSYIPNYNPRDIIANVRRLLSRETMVPMDPWYKGF 60
Query: 494 KGIIEKSAKEGGYIVNGTVEEIDEQSFRITELPIRKWTQDYKQFLESITDGSPNVKDPLI 553
KG IE S KEGGY+VNG+VEEI+E +FRITELPIRKWTQDYKQFL+SITDGSPN
Sbjct: 61 KGTIETSPKEGGYVVNGSVEEINEHNFRITELPIRKWTQDYKQFLDSITDGSPN------ 114
Query: 554 EDFRQNGDDAMVDIEIRMKLEKIAMIMQEGLLKKFKLTTTISTSNMHLFDAEGKIKKYEN 613
DFRQNGDDA V+IE+RMKLEKI IMQEGLLKKFKLT++IST+NMHLFD EGKIKKYEN
Sbjct: 115 -DFRQNGDDATVNIEVRMKLEKIVGIMQEGLLKKFKLTSSISTNNMHLFDTEGKIKKYEN 173
Query: 614 PEQILEEFFPLRLDYYERRKQYILENFERLLLVLDNKVRFILGVVSGEIVVSNRKKADLL 673
PEQILEEFF LRL YYERRK KKADL+
Sbjct: 174 PEQILEEFFLLRLKYYERRK----------------------------------KKADLM 199
Query: 674 MELQQKGFTPMPKKGKSAEP 693
+ELQQKGFTPMP+KGKSAEP
Sbjct: 200 IELQQKGFTPMPRKGKSAEP 219
>Glyma09g21300.1
Length = 951
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 164/359 (45%), Gaps = 46/359 (12%)
Query: 309 LQRSIPSVVDGLKPGQRKILFCSFK-----KKLFKEIK--VGQFIGYVSEHSAYH-HGEQ 360
L R++P V DGLKP R+ILF + KK FK+ VG+ +G +H HG+
Sbjct: 113 LGRALPDVRDGLKPVHRRILFAMHELGLSSKKPFKKCARVVGEVLG------KFHPHGDT 166
Query: 361 SLASTIIGMAQDFVGSNNINLLKPNGQFGTRNLGGKDHASSRYIYTELNPITRC-LFHEN 419
++ +++ MAQDF S L++ +G FG+ + A+ RY L+ +T L +
Sbjct: 167 AVYDSLVRMAQDF--SLRSPLIQGHGNFGS--IDADPPAAMRYTECRLDDLTEAMLLTDL 222
Query: 420 DDKLLEYL-NEDGRSIEPSWYIPIIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLL 478
+ ++++ N D EPS +P +L+NGS GI G ++ IP +N +++ + L+
Sbjct: 223 EQDTVDFVPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNLGEVVDVLCVLI 282
Query: 479 -NDETMV------------PMDPWYRGFKGIIEK-SAKEGGYIVNGT--VEEIDEQSFR- 521
N E + P G GI+E G I+ G +E +D ++ R
Sbjct: 283 HNPEATLQELLEYMPGPDFPTGGLIMGNLGILEAYRTGRGRVIIRGKTDIELLDSKTKRT 342
Query: 522 ---ITELPIRKWTQDYKQFLESITDGSPNVKDPLIEDFRQNGDDAMVDIEIRMKLEKIAM 578
I E+P + + +E I + N I D R D + + I I +K +
Sbjct: 343 AIIIKEIP---YQTNKATLVEKIAELVENKSLDGISDIRDESDRSGMRIVIELKRGSDPL 399
Query: 579 IMQEGLLKKFKLTTTISTSNMHLFDAEGKIKKYENPEQILEEFFPLRLDYYERRKQYIL 637
I+ L + L +T S + + + + + K +++L+ F R ERR ++ L
Sbjct: 400 IVLNNLYRLTSLQSTFSCNMVGILNGQ---PKQMGLKELLQAFLDFRCSVVERRARFKL 455
>Glyma03g28290.1
Length = 726
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 9/224 (4%)
Query: 56 DAGGRNSDKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASNKQIMDNE 115
D + ++C + + EGDSA A G R + PLRGK+LN+ + NE
Sbjct: 498 DCSSTDPEECEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNIERRDEAAMYKNE 554
Query: 116 EIQNIKKILGLQQNKEYSNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVP 175
EIQN+ LGL E +LRY ++I+ D D DG+HI+ LL+ F + +L
Sbjct: 555 EIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEG 614
Query: 176 SFMVEFTTPIIRAFHSNGTKLSF-YSMPEYESWRENLGNNATGWKIKYYKGLGTSTPQEG 234
V P+ + G ++ + Y + + + + NA+ + ++ +KGLG P +
Sbjct: 615 CIYVG-VPPLYKVVR--GKQVHYCYDDADLKKLQRSFPANAS-YNMQRFKGLGEMMPLQL 670
Query: 235 REYFRDLGKH-RKDFVWEDDYDGSAIEMAFSKKKAEDRKVWIRN 277
E D + K ED + + + + + + RK IRN
Sbjct: 671 WETTMDPERRLLKQLKVEDAAEANIVFSSLMGTRVDVRKELIRN 714
>Glyma19g31030.1
Length = 724
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 9/224 (4%)
Query: 56 DAGGRNSDKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASNKQIMDNE 115
D + ++C + + EGDSA A G R + PLRGK+LN+ + NE
Sbjct: 496 DCSSTDPEECEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNIERRDEAAMYKNE 552
Query: 116 EIQNIKKILGLQQNKEYSNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVP 175
EIQN+ LGL E +LRY ++I+ D D DG+HI+ LL+ F + +L
Sbjct: 553 EIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEG 612
Query: 176 SFMVEFTTPIIRAFHSNGTKLSF-YSMPEYESWRENLGNNATGWKIKYYKGLGTSTPQEG 234
V P+ + G ++ + Y + + + + NA+ + ++ +KGLG P +
Sbjct: 613 CIYVG-VPPLYKVVR--GKQVHYCYDDADLKKLQRSFPPNAS-YNMQRFKGLGEMMPLQL 668
Query: 235 REYFRDLGKH-RKDFVWEDDYDGSAIEMAFSKKKAEDRKVWIRN 277
E D + K ED + + + + + + RK IRN
Sbjct: 669 WETTMDPERRLLKQLKVEDAAEANIVFSSLMGTRVDFRKELIRN 712