Miyakogusa Predicted Gene

Lj3g3v0824810.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0824810.3 Non Chatacterized Hit- tr|I1NHX5|I1NHX5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.24950
PE,73.19,0,STRUCTURAL MAINTENANCE OF CHROMOSOMES 5 SMC5,NULL;
STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 (SMC5, ,CUFF.41527.3
         (1052 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g34020.1                                                      1520   0.0  
Glyma09g36430.1                                                        67   1e-10
Glyma13g27210.1                                                        62   3e-09
Glyma12g36520.1                                                        62   3e-09

>Glyma20g34020.1 
          Length = 1013

 Score = 1520 bits (3935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 756/1052 (71%), Positives = 846/1052 (80%), Gaps = 39/1052 (3%)

Query: 1    MVESRSPKRHKITRGEDDYMPGNILEIELSNFMTFDYLKCKPGPRLNLVIGPNGSGKSSL 60
            M ESR PKR KI+RG+DDYMPGNILEIEL NFMTFDYLKCKPGPRLNLVIGPNGSGKSSL
Sbjct: 1    MAESRPPKRPKISRGDDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSL 60

Query: 61   VCAIALGLGGEPQLLGRATKIGEYVKRGEDSGFIKVTLRGDHKEERITITRQINAYNTSE 120
            VCAIALGL GEPQLLGRAT IG YVKRGE+SG+IK+TLRGDHK E ITI R+IN  N SE
Sbjct: 61   VCAIALGLCGEPQLLGRATSIGAYVKRGEESGYIKITLRGDHKVEHITIMRKINTNNKSE 120

Query: 121  WLFNGNVVPRKDVVETIQKLNIQVDNLTQFLPQDRVCQFAKLTPVQLLEETEKAVGDPQL 180
            WL NGNVVP+KDV ETIQ+ NIQV+NLTQFLPQDRVC+FAKLTPVQLLEETEKAVGDPQL
Sbjct: 121  WLLNGNVVPKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQL 180

Query: 181  PEQHRALIDKSRALKHIELSLEKNEGTLKQLKERNAELEKDVERVRQRNELLAKAESMKK 240
            PEQHRAL+DKSRALKHIELSLEKNEGTLKQLKERNAELE DVERVRQR+ELLAKAE+MKK
Sbjct: 181  PEQHRALVDKSRALKHIELSLEKNEGTLKQLKERNAELETDVERVRQRDELLAKAEAMKK 240

Query: 241  KLPWLRYDMKQVEYGEAKIRENXXXXXXXXXXXXXSDLKEPIKKQKEEKDALNVKCKTVS 300
            KLPWLRYDMKQ EY EAK REN             +DLKEPI KQKEEK AL  KCK VS
Sbjct: 241  KLPWLRYDMKQAEYREAKERENDAAKALEEAAELLNDLKEPIMKQKEEKAALYAKCKKVS 300

Query: 301  SCLIDNGNKRMELREKESQLDGELQSKYKEMDNLRKQDNSRQXXXXXXXXXXXXXXXXXX 360
            +   +N  KR EL E+E++LD EL+ KYKEM+ LR+Q+ +RQ                  
Sbjct: 301  NHASENAKKRTELMEEENKLDVELKGKYKEMEELRRQEETRQQKLVKAREEVAIAELELE 360

Query: 361  XXHPFVPPRDELQKLNDELWKLEHSTSHVRQNKSQAEHEINQKKLLLMKCKERLRGMNNK 420
                +VPP+DEL                                        RL  MNNK
Sbjct: 361  NLPLYVPPKDELV---------------------------------------RLIEMNNK 381

Query: 421  NTRCLLQLQKCGVEKNFEAYKWVRENRYKFNKDVYGPVLLEVNVPNQKHAQYLEGQVAHH 480
            +T+CL  LQ+ G EK FEAYKWV+++R++FNK+VYGPVLLEVNV N+ HA YLEGQVAH+
Sbjct: 382  STKCLHALQRSGAEKIFEAYKWVQDHRHEFNKEVYGPVLLEVNVSNKDHAAYLEGQVAHY 441

Query: 481  VWKSFITQDSGDRDLLVKNLKFFDVPILNYTGGDNHQRRPFEISEDMRALGIYSRLDQIF 540
             WKSFITQDSGDRDLL K+L+FFDV +LNYTGGD  QR PFEISED RALGIYSRLDQIF
Sbjct: 442  TWKSFITQDSGDRDLLAKHLRFFDVNVLNYTGGDGPQREPFEISEDKRALGIYSRLDQIF 501

Query: 541  DAPVVVKETMISTSMLDLSYIGSKETDQKSEVVPRLGIMDLWTPENHYRWFDSRYVNHVG 600
            DAP+ VKE +IS   LD SYIGS+++DQ +  V +LGI+D WTPENHY W  SRY N+  
Sbjct: 502  DAPIAVKEVLISQFNLDYSYIGSEKSDQNAGEVRKLGILDFWTPENHYHWSKSRYANYES 561

Query: 601  AIVHHVDPPKLLSNTSNVGGIENLISDERELEERIATLEESIKRSLEEERRLRNQVASLH 660
            A+V+ V  P+LL N  NVG IE L S++RELEE +A LEES+KR  +EER L NQ A+L 
Sbjct: 562  AVVNQVQRPQLLLNNLNVGEIEKLSSEQRELEEIVANLEESVKRFHDEERSLLNQSANLR 621

Query: 661  KQREGINITTRNEQEKRKKLLGRIEQRKAILKSIAEQDDMDTEIAKLVDQAEKYNIQRFH 720
            KQ E I+IT +NEQ+KR+ ++ RI+Q+K  LK + E+DD+DTEIAKLVDQA KYNI+RFH
Sbjct: 622  KQWEDISITVQNEQKKRQAIISRIDQKKKFLKLMEERDDLDTEIAKLVDQATKYNIRRFH 681

Query: 721  NAIKMKDLLIEAMGYRQNVVELRMSLIEFDAKIGEMEAKLKKPENFALQVKLHFDGCKKE 780
            NA+++KDLL+EA+ YR+  +E RM+ IEFDAKI EMEA LK+ E FALQ  LHFD CKKE
Sbjct: 682  NAMEIKDLLVEAVSYRRIFIEQRMAFIEFDAKIVEMEANLKQHEKFALQASLHFDNCKKE 741

Query: 781  TENCRQQLTDSLNYAKSIARLTPELEKEFLEMATTIEELEAAIQDTTAQANSILFVNHNI 840
            +ENCRQ LTDSL YAKSIARLTPEL+KEFLEM TTIE+LEAAIQDTT++ANSILFVNHNI
Sbjct: 742  SENCRQDLTDSLKYAKSIARLTPELKKEFLEMPTTIEDLEAAIQDTTSEANSILFVNHNI 801

Query: 841  LEQYEDRQRHIEDLAVKLEADKNESRRCLAELDNIKGKWLPTLRNLVAQINETFRCNFQE 900
            LEQYEDRQ+ IEDLA KLEADK ES RCLAEL+NIKGKWLPTLRNLVA+INETF  NFQE
Sbjct: 802  LEQYEDRQQQIEDLAAKLEADKKESTRCLAELNNIKGKWLPTLRNLVAKINETFSFNFQE 861

Query: 901  MAVAGEVSLEEHDMDFDKFGILIKVKFRENSQLQILSAHHQSGGERSVSTIVYLVSLQDL 960
            MAVAGEVSL+E DMDFD+FGILIKVKFREN QLQ LSAHHQSGGERSVSTIVYLVSLQDL
Sbjct: 862  MAVAGEVSLDERDMDFDQFGILIKVKFRENGQLQNLSAHHQSGGERSVSTIVYLVSLQDL 921

Query: 961  TNCPFRVVDEINQGMDPINERKMFQQLVRAASKANTPQCFLLTPKLLPDLQYSEACSILN 1020
            TNCPFRVVDEINQGMDPINERKMFQQLVRAASK NTPQCFLLTPKLLPDLQYSEACSILN
Sbjct: 922  TNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILN 981

Query: 1021 VMNGPWIGQASKVWTIGDSWSIITRHVEENLC 1052
            VMNGPWI Q SKVWT GD WSIIT  V +  C
Sbjct: 982  VMNGPWIEQPSKVWTAGDRWSIITGLVGDTHC 1013


>Glyma09g36430.1 
          Length = 1080

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 113/237 (47%), Gaps = 16/237 (6%)

Query: 21  PGNILEIELSNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATK 80
            G +  + L NFM     + + G  +N + G NGSGKS+++ A+ +  G   +   RA+ 
Sbjct: 17  AGIVKRLRLENFMCHSKHETEFGNHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRAST 76

Query: 81  IGEYVKRGEDSGFIKVTLRGDHKEE--------RITITRQINAYNTSEWLFNGN---VVP 129
           + +++K G  +  I+V ++ + ++          I + R+I+   +S  L +     VV 
Sbjct: 77  LKDFIKTGATTAVIQVEIQNEGEDAFKPEIYGPVIIVERRISESTSSTTLKDHQGRKVVS 136

Query: 130 RK-DVVETIQKLNIQVDNLTQFLPQDRVCQFAKLTPVQLLEETEKAVGDPQLPEQHRALI 188
           RK D++E ++  NI V+N    + QD+  +F      +   +  K      L +Q   L+
Sbjct: 137 RKADLLEIVEHFNIDVENPCVIMSQDKSREFLHSGNNK---DKFKFFYKATLLQQVNDLL 193

Query: 189 DK-SRALKHIELSLEKNEGTLKQLKERNAELEKDVERVRQRNELLAKAESMKKKLPW 244
           +  S  +   +L +E+ E  ++ ++    EL+  +  +    ++  + + +KKKL W
Sbjct: 194 ESISNEITSAQLVVEELETAIRPIENELNELQVKIRNMEHVEQISIQVQQLKKKLAW 250



 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 942  SGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKANTPQCFL 1001
            SGGERS ST+ + ++L ++T  PFR +DE +  MD ++ +     LV  A +A+  Q   
Sbjct: 997  SGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFA-EAHGSQWIF 1055

Query: 1002 LTP 1004
            +TP
Sbjct: 1056 ITP 1058


>Glyma13g27210.1 
          Length = 1171

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 15/168 (8%)

Query: 24  ILEIELSNFMTFDYLKCKPG--PRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATKI 81
           I EI L  F ++      PG  P  N + G NGSGKS+++ +I   LG       RA+ +
Sbjct: 3   IKEICLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNL 62

Query: 82  GEYVKRGEDSGFIKVTLR-------------GDHKEERITITRQINAYNTSEWLFNGNVV 128
            E V +   +G  K T+              G      IT+TRQI     +++L NG + 
Sbjct: 63  QELVYKQGQAGITKATVSVVFDNSNSSRSPLGYEGHSEITVTRQIVVGGRNKYLINGKLA 122

Query: 129 PRKDVVETIQKLNIQVDNLTQFLPQDRVCQFAKLTPVQLLEETEKAVG 176
               V      + + V+N    + Q R+ +   + P ++L   E+A G
Sbjct: 123 QPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAG 170


>Glyma12g36520.1 
          Length = 1171

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 15/168 (8%)

Query: 24  ILEIELSNFMTFDYLKCKPG--PRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATKI 81
           I EI L  F ++      PG  P  N + G NGSGKS+++ +I   LG       RA+ +
Sbjct: 3   IKEICLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNL 62

Query: 82  GEYVKRGEDSGFIKVTLR-------------GDHKEERITITRQINAYNTSEWLFNGNVV 128
            E V +   +G  K T+              G      IT+TRQI     +++L NG + 
Sbjct: 63  QELVYKQGQAGITKATVSVVFDNSHSSRSPLGYEGHSEITVTRQIVVGGRNKYLINGKLA 122

Query: 129 PRKDVVETIQKLNIQVDNLTQFLPQDRVCQFAKLTPVQLLEETEKAVG 176
               V      + + V+N    + Q R+ +   + P ++L   E+A G
Sbjct: 123 QPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPQEILSMLEEAAG 170