Miyakogusa Predicted Gene

Lj3g3v0821280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0821280.1 tr|G7J1L2|G7J1L2_MEDTR Crossover junction
endonuclease MUS81 OS=Medicago truncatula GN=MTR_3g022850
,73.01,0,CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81,NULL;
seg,NULL; ERCC4 domain,ERCC4 domain; ERCC4,ERCC,CUFF.41470.1
         (664 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g20970.1                                                       961   0.0  
Glyma04g28530.1                                                       106   1e-22

>Glyma11g20970.1 
          Length = 625

 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/621 (76%), Positives = 522/621 (84%), Gaps = 26/621 (4%)

Query: 1   MENRA-RVRCPENQELCSYMWNKWKEMAE--KGVSDNIEMALSKAHSNVCNSKNPILTIK 57
           MENR  +VRCPENQEL +Y+WNKWKEMA+  KG+SDNI+M LSKAH N+CNSK PI TIK
Sbjct: 1   MENRTTQVRCPENQELATYVWNKWKEMAQQPKGISDNIDMTLSKAHFNLCNSKTPIRTIK 60

Query: 58  DFAQVKGVGKMILKLMQGFFGTGSGGPEPEDLXXXXXXXXXXXRYVPQRNSVAYALLITL 117
           DF+QVKGVGKMILKLMQGFFGTGS   EPEDL           RY+PQRNSVAYALLITL
Sbjct: 61  DFSQVKGVGKMILKLMQGFFGTGS---EPEDLTKKGKRTKGTKRYMPQRNSVAYALLITL 117

Query: 118 YRGTSSGNEFMRKQELIDAAEASGLSRVPIAPELGKGKPGRFGSSPKEWYSGWNCMKTLI 177
           YRGTSSGNEFM KQELIDA+EASGLSRVPIAPE GKGKPG FGSS ++WYSGW+CMKTLI
Sbjct: 118 YRGTSSGNEFMHKQELIDASEASGLSRVPIAPEKGKGKPGHFGSSSRDWYSGWSCMKTLI 177

Query: 178 AKGLVVKSSCPAKYMLTQEGKEAASDCLSRSGMTESLEKSASVENPLHMDKENSLDMEPD 237
           AKGL+VKSSCPAKYMLTQEGKEAA DCL+RSGM ES+E S+SVE P  MD +N LD+E +
Sbjct: 178 AKGLIVKSSCPAKYMLTQEGKEAARDCLARSGMAESIEMSSSVEIPSCMDNQNLLDVELN 237

Query: 238 SHDMEPEVMSPLTQRKKPIDVPLDSLERFTNMGYSKEQIVAAFTDVSGRHPNKDVSSLWP 297
            HD+E EV+SPLTQ+KKPIDVPLD LERFT MGYSKE I+ AFT+VS  HPNKDVSSLWP
Sbjct: 238 GHDLESEVLSPLTQQKKPIDVPLDCLERFTQMGYSKEHIIGAFTEVSKSHPNKDVSSLWP 297

Query: 298 AVLCHLREEQVYGSQPESQIRENNPQILRTNTVVNDPSGFIGKESRTVSSSFGGHVANFC 357
           AVLCHLREEQVYGSQPESQ   +                 I K+SR VS     HV N C
Sbjct: 298 AVLCHLREEQVYGSQPESQRSRD----------------LIVKDSRAVSL----HVRNIC 337

Query: 358 SPDIPPRTLRACSSANYPMQKPSQDGLKSKMNILSVPPLSLGERFEDAYEVILILDDREQ 417
           S DIPP TLRACSSA+ PMQ P++D L SK+NIL+VPPLSLGERFEDAY+V+LILDDREQ
Sbjct: 338 SHDIPPFTLRACSSADRPMQNPNKDELVSKLNILNVPPLSLGERFEDAYDVVLILDDREQ 397

Query: 418 FATQGSRSRKIVENIRTQFKIQIEVRRLPVGDGIWIARHKTLDSEYVLDFIVERKKIDDL 477
           FATQGSRSRKI+ENIR+QFKIQIEVRRLPVGDGIWIARHKTL+SEYVLDFIVERKK +DL
Sbjct: 398 FATQGSRSRKIIENIRSQFKIQIEVRRLPVGDGIWIARHKTLNSEYVLDFIVERKKTNDL 457

Query: 478 RSSIRDNRYKDQXXXXXXXXXXXXIYLVEGDPNASEAAESIKTACFTTEILEGFDIQRTS 537
            SSIRDNRYKDQ            IYLVEGDPN+SEAAESIKTACFTTEILEGFD+QRTS
Sbjct: 458 CSSIRDNRYKDQKLRLLRCGLKKLIYLVEGDPNSSEAAESIKTACFTTEILEGFDVQRTS 517

Query: 538 GLGDTLRKYGYLTQAISQYYKSEFFEDNVKCSETCPPFDEFIRRCQEHEKMTVSDVFAVQ 597
           GLGDTLRKYGYLTQAISQYYKSE FEDNVK S  CPPFDEFI+RCQ+ EK TVSDVFA+Q
Sbjct: 518 GLGDTLRKYGYLTQAISQYYKSEIFEDNVKGSGACPPFDEFIKRCQDLEKTTVSDVFAMQ 577

Query: 598 LMQVPQVTEEIAMAVLDLYPT 618
           LMQVPQVTEE+AMAVLDL+PT
Sbjct: 578 LMQVPQVTEEVAMAVLDLFPT 598


>Glyma04g28530.1 
          Length = 66

 Score =  106 bits (264), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/80 (66%), Positives = 58/80 (72%), Gaps = 17/80 (21%)

Query: 522 CFTTEILEGFDIQRTSGLGDTLRKYGYLTQAISQYYKSEFFEDNVKCSETCPPFDEFIRR 581
           CFTTEILEGFD+QRTSGLGDTLRKY                 DNVK S TCP FDEFI+R
Sbjct: 1   CFTTEILEGFDVQRTSGLGDTLRKY-----------------DNVKRSGTCPSFDEFIKR 43

Query: 582 CQEHEKMTVSDVFAVQLMQV 601
           CQ+ +KMTVSDVF +QLMQV
Sbjct: 44  CQDLKKMTVSDVFNMQLMQV 63