Miyakogusa Predicted Gene

Lj3g3v0766060.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0766060.2 tr|A9S0A0|A9S0A0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_162087,47.75,7e-18,seg,NULL; TPR_9,NULL,CUFF.41376.2
         (138 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g17940.1                                                       137   4e-33
Glyma11g21670.1                                                        54   6e-08

>Glyma04g17940.1 
          Length = 96

 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/96 (76%), Positives = 80/96 (83%), Gaps = 1/96 (1%)

Query: 44  ACERLILLTNDANELRDYSILLYHCGLYEQSFQYLKKYRELKNSSTEVTSLNTLSSLEE- 102
           ACERLILL NDANE RDYSILLYHCGLYEQS +YL KYR+LKNSS + +S +   S  E 
Sbjct: 1   ACERLILLKNDANEFRDYSILLYHCGLYEQSLEYLTKYRDLKNSSRQESSSSNSLSSLEE 60

Query: 103 DAVDKLMTRLSLILMEQGWSRPSYARNFLSNNSEPW 138
           DAVD LM RL+L+LMEQGWSRPSYARNFL NNSEPW
Sbjct: 61  DAVDNLMMRLNLVLMEQGWSRPSYARNFLGNNSEPW 96


>Glyma11g21670.1 
          Length = 340

 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/26 (88%), Positives = 24/26 (92%)

Query: 23  HRLDRGVWTNACFGDMRRSLSACERL 48
           HRLDRGVWT+  FGDMRRSLSACERL
Sbjct: 306 HRLDRGVWTSVRFGDMRRSLSACERL 331