Miyakogusa Predicted Gene

Lj3g3v0744700.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0744700.1 Non Chatacterized Hit- tr|H0XGW1|H0XGW1_OTOGA
Uncharacterized protein OS=Otolemur garnettii
GN=POLR2,37.41,2e-19,RNA_pol_Rpb4,RNA polymerase II, Rpb4;
DNA-DIRECTED RNA POLYMERASE II,NULL; DNA-directed
RNA-polymera,NODE_25702_length_500_cov_362.506012.path2.1
         (138 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g22220.1                                                       279   8e-76
Glyma16g09890.1                                                       278   1e-75
Glyma05g32260.1                                                       276   5e-75
Glyma09g01880.1                                                        83   1e-16
Glyma15g12830.1                                                        79   1e-15

>Glyma03g22220.1 
          Length = 138

 Score =  279 bits (713), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 136/138 (98%), Positives = 138/138 (100%)

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ+SDDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120
           YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIK+RGRAQD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQD 120

Query: 121 DEAIEKMLNDLSLIKKFE 138
           DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138


>Glyma16g09890.1 
          Length = 138

 Score =  278 bits (712), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 135/138 (97%), Positives = 138/138 (100%)

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ+SDDPMNQ+SQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQISQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120
           YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIK+RGRAQD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQD 120

Query: 121 DEAIEKMLNDLSLIKKFE 138
           DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138


>Glyma05g32260.1 
          Length = 138

 Score =  276 bits (706), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 134/138 (97%), Positives = 138/138 (100%)

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQ+SDDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120
           YVKRFSRYKNPDAVRQVREILARY+LAEFELCVLGNLCPETVEEAIAMVPSIK+RGRAQD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILARYELAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQD 120

Query: 121 DEAIEKMLNDLSLIKKFE 138
           DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138


>Glyma09g01880.1 
          Length = 211

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 71/111 (63%), Gaps = 1/111 (0%)

Query: 22  KCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREIL 81
           KCLM+CE   IL+   E++   S D   ++   F+K LQY K  S+Y +  ++R + + L
Sbjct: 96  KCLMDCEAVDILQGIQERMVMLSRDSTVKMPISFDKGLQYAKSNSKYLDLQSIRHILDRL 155

Query: 82  ARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLS 132
           A+  + + E+CV+GN+CPET++E  A++PS+K R R  D + ++  L++L+
Sbjct: 156 AKCGVTDSEICVIGNVCPETIDEVFALLPSLKDR-RNIDSQVLKDSLSELA 205


>Glyma15g12830.1 
          Length = 252

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 71/111 (63%), Gaps = 1/111 (0%)

Query: 22  KCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREIL 81
           KCL++CE   IL+   E++   S D   ++   F+K LQY K  ++Y +  ++R++ + L
Sbjct: 137 KCLIDCEAVDILQGIQERMVMLSRDSTIKMPISFDKGLQYAKSSTKYTDLHSIRRILDPL 196

Query: 82  ARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLS 132
           A+  L + E+CV+GN+CPET++E  A++PS+K + R  D + ++  L+ L+
Sbjct: 197 AKCGLTDSEICVIGNVCPETIDEVFALLPSLKDK-RNIDRQVLKDSLSQLA 246