Miyakogusa Predicted Gene

Lj3g3v0719990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0719990.1 tr|A9SEY9|A9SEY9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_233124,32.14,0.000000000008,Tim17,Mitochondrial inner
membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein
PMP24; ,CUFF.41215.1
         (207 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g16170.1                                                       283   1e-76

>Glyma17g16170.1 
          Length = 203

 Score =  283 bits (723), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 141/207 (68%), Positives = 160/207 (77%), Gaps = 4/207 (1%)

Query: 1   MGSENQGTPDPDGVEINALXXXXXXXXXXWTTRIFIPXXXXXXXXXXXXXISKHRKTLGL 60
           MGSEN+  P   G E+N            W +RI IP             ISKHR+TLGL
Sbjct: 1   MGSENKEAP---GGELNN-SSPSPSSSHAWKSRIVIPTLLAGVAGAGAGLISKHRRTLGL 56

Query: 61  ANVCASYAANFSIVTGCYCGAREFAIATRKTGPEDLWSSAIAGFGSGALLGRLYGGHLGA 120
           A VC++YA NF+IVTGCYCGAREF  ATRKTGP+D+ +SA+AGFG+GALLGRL GG LGA
Sbjct: 57  ATVCSNYAVNFTIVTGCYCGAREFVAATRKTGPDDILNSAVAGFGTGALLGRLQGGQLGA 116

Query: 121 LRYSVIFAVVGTSADFAILKLKDVIRDQNKTIYQHIENSKKSGNLLRLPEWFPIRVLDEE 180
           +RYSV+FAVVGT+ADFAILKLKD +RD  KTIYQHIENSKKSG  L+LPEWFPI+VLDEE
Sbjct: 117 IRYSVMFAVVGTTADFAILKLKDALRDHTKTIYQHIENSKKSGTWLKLPEWFPIQVLDEE 176

Query: 181 ALAEKRAQEEQFLAQRARIRSLKEEES 207
           ALA KRAQEEQFL QRARIRSL+EEES
Sbjct: 177 ALAAKRAQEEQFLQQRARIRSLREEES 203