Miyakogusa Predicted Gene

Lj3g3v0719980.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0719980.2 tr|B9GQL6|B9GQL6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_756296 PE=4
SV=1,62.34,1e-17,DNA-binding domain in plant proteins such as,AP2/ERF
domain; seg,NULL; DNA-binding domain,DNA-bindin,CUFF.41213.2
         (234 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g46250.2                                                       200   1e-51
Glyma08g46250.1                                                       200   1e-51
Glyma18g33460.1                                                       194   6e-50

>Glyma08g46250.2 
          Length = 228

 Score =  200 bits (508), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/235 (52%), Positives = 139/235 (59%), Gaps = 9/235 (3%)

Query: 1   MVSXXXXXXXXXCSGDNSFVTPLPLYCENLAGDENSSQHGKPKRQSEQAVLSDIASVLDS 60
           MVS         CSG++SFVTPLPLYCENL+G ENS+Q  KPK  SEQ  LSD A+  DS
Sbjct: 1   MVSLRRRRLLGLCSGNSSFVTPLPLYCENLSGFENSNQQAKPK--SEQPALSDDATNPDS 58

Query: 61  NTIVKDEXXXXXXXXXXXXXXXXXXXXXXXXXXRRKRHSRKPIHNQEPCLMRGVYFKNMK 120
           N +V++E                          RRKRH RK +HNQE C+MRGVYFKNMK
Sbjct: 59  NNVVQEEPGSSNASGSSSSKEQLIQQITGPPIKRRKRHRRKNLHNQEQCIMRGVYFKNMK 118

Query: 121 WQAAIKVDKKQIHLGTVASQEEAAHLYDRAAFMCGXXXXXXXXXXXXXXXXXXXXXXXLA 180
           WQAAIKVDKKQIHLGT+ SQEEAAHLYDRAAFMCG                       LA
Sbjct: 119 WQAAIKVDKKQIHLGTLGSQEEAAHLYDRAAFMCGREPNFELPEEEKRDLSKFKWDEFLA 178

Query: 181 MTRQAITSKKHKGRHSPGPRNRIEEPSLHIGDSKSKQ-VANDFSGSGYAEQETAI 234
           MTRQAIT KKHK R SPGP N  +   L   D  +KQ V  D      AEQET++
Sbjct: 179 MTRQAITRKKHKRRLSPGPGNSHDMLPLSKDDWDTKQGVIED------AEQETSV 227


>Glyma08g46250.1 
          Length = 228

 Score =  200 bits (508), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/235 (52%), Positives = 139/235 (59%), Gaps = 9/235 (3%)

Query: 1   MVSXXXXXXXXXCSGDNSFVTPLPLYCENLAGDENSSQHGKPKRQSEQAVLSDIASVLDS 60
           MVS         CSG++SFVTPLPLYCENL+G ENS+Q  KPK  SEQ  LSD A+  DS
Sbjct: 1   MVSLRRRRLLGLCSGNSSFVTPLPLYCENLSGFENSNQQAKPK--SEQPALSDDATNPDS 58

Query: 61  NTIVKDEXXXXXXXXXXXXXXXXXXXXXXXXXXRRKRHSRKPIHNQEPCLMRGVYFKNMK 120
           N +V++E                          RRKRH RK +HNQE C+MRGVYFKNMK
Sbjct: 59  NNVVQEEPGSSNASGSSSSKEQLIQQITGPPIKRRKRHRRKNLHNQEQCIMRGVYFKNMK 118

Query: 121 WQAAIKVDKKQIHLGTVASQEEAAHLYDRAAFMCGXXXXXXXXXXXXXXXXXXXXXXXLA 180
           WQAAIKVDKKQIHLGT+ SQEEAAHLYDRAAFMCG                       LA
Sbjct: 119 WQAAIKVDKKQIHLGTLGSQEEAAHLYDRAAFMCGREPNFELPEEEKRDLSKFKWDEFLA 178

Query: 181 MTRQAITSKKHKGRHSPGPRNRIEEPSLHIGDSKSKQ-VANDFSGSGYAEQETAI 234
           MTRQAIT KKHK R SPGP N  +   L   D  +KQ V  D      AEQET++
Sbjct: 179 MTRQAITRKKHKRRLSPGPGNSHDMLPLSKDDWDTKQGVIED------AEQETSV 227


>Glyma18g33460.1 
          Length = 228

 Score =  194 bits (494), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 126/235 (53%), Positives = 136/235 (57%), Gaps = 9/235 (3%)

Query: 1   MVSXXXXXXXXXCSGDNSFVTPLPLYCENLAGDENSSQHGKPKRQSEQAVLSDIASVLDS 60
           MVS         CSG++SFVTPLPLYCENL+G ENS+Q  K K  SEQ  LSD AS  DS
Sbjct: 1   MVSLRRRRLLGLCSGNSSFVTPLPLYCENLSGFENSNQQAKTK--SEQPGLSDDASNPDS 58

Query: 61  NTIVKDEXXXXXXXXXXXXXXXXXXXXXXXXXXRRKRHSRKPIHNQEPCLMRGVYFKNMK 120
           N  V++E                          RRKRH RK +HNQE C+MRGVYFKNMK
Sbjct: 59  NNAVQEEPGSSNASGSSSSKEQLIQQITGPPIKRRKRHRRKNLHNQEQCVMRGVYFKNMK 118

Query: 121 WQAAIKVDKKQIHLGTVASQEEAAHLYDRAAFMCGXXXXXXXXXXXXXXXXXXXXXXXLA 180
           WQAAIKVDKKQIHLGTV SQEEAAHLYDRAAFMCG                       LA
Sbjct: 119 WQAAIKVDKKQIHLGTVGSQEEAAHLYDRAAFMCGREPNFELPEDEKRELSKFKWDEFLA 178

Query: 181 MTRQAITSKKHKGRHSPGPRNRIEEPSLHIGDSKSKQ-VANDFSGSGYAEQETAI 234
           MTRQAIT KKHK R SPGP N  +   L   D  SKQ V  D      AEQET +
Sbjct: 179 MTRQAITRKKHKRRLSPGPDNGHDILPLPKDDWDSKQGVIED------AEQETPV 227