Miyakogusa Predicted Gene

Lj3g3v0642580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0642580.1 tr|Q6UP31|Q6UP31_CHLRE NADH:ubiquinone
oxidoreductase 18 kDa subunit OS=Chlamydomonas reinhardtii
GN,35.06,1e-17,NDUFA12,NADH:ubiquinone oxidoreductase, 17.2kDa
subunit; SUBFAMILY NOT NAMED,NULL; NADH-UBIQUINONE O,CUFF.41082.1
         (159 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g43850.1                                                       286   5e-78
Glyma11g01320.1                                                       283   4e-77
Glyma18g16750.1                                                       112   1e-25
Glyma02g10440.1                                                       100   5e-22

>Glyma01g43850.1 
          Length = 156

 Score =  286 bits (733), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 134/156 (85%), Positives = 145/156 (92%)

Query: 1   MASLVKSILNSVKEKGLGGFLRHLKDDGFMRCLPDGNLLQTKIHGIGARLVGVDKFGNKY 60
           MAS+VK++L SV+EKG G FLR LKD+G++RCLPDGNLLQTKIH IGA LVGVDKFGNKY
Sbjct: 1   MASVVKNVLKSVREKGFGAFLRELKDEGYLRCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YEKIENTINGRHRWVEYAEKKRYNASQVPPEWHGWLHFITDHTGDELLLLKPKRYGVEHK 120
           YEK+ +T  GRHRW+EYAEK RYNASQVP EWHGWLHFITDHTGDELLLLKPKRYGVEHK
Sbjct: 61  YEKLGDTQYGRHRWIEYAEKTRYNASQVPAEWHGWLHFITDHTGDELLLLKPKRYGVEHK 120

Query: 121 ENLSGEGEQFIYHSKGHALNPGQRNWTRYQPWESKA 156
           ENLSGEGEQ+IYHSKGHALNPGQRNWTRYQPWESKA
Sbjct: 121 ENLSGEGEQYIYHSKGHALNPGQRNWTRYQPWESKA 156


>Glyma11g01320.1 
          Length = 158

 Score =  283 bits (725), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 133/155 (85%), Positives = 144/155 (92%)

Query: 1   MASLVKSILNSVKEKGLGGFLRHLKDDGFMRCLPDGNLLQTKIHGIGARLVGVDKFGNKY 60
           MAS+VK++L SV+EKG G FLR LKD+G++RCLPDGNLLQTKIH IGA LVGVDKFGNKY
Sbjct: 1   MASVVKNVLKSVREKGFGAFLRELKDEGYLRCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YEKIENTINGRHRWVEYAEKKRYNASQVPPEWHGWLHFITDHTGDELLLLKPKRYGVEHK 120
           YEK+ +T  GRHRWVEYAEK RYNASQVP EWHGWLHFITDHTGDELLLLKPKRYG+EHK
Sbjct: 61  YEKLGDTQFGRHRWVEYAEKTRYNASQVPAEWHGWLHFITDHTGDELLLLKPKRYGIEHK 120

Query: 121 ENLSGEGEQFIYHSKGHALNPGQRNWTRYQPWESK 155
           ENLSGEGEQ+IYHSKGHALNPGQRNWTRYQPWESK
Sbjct: 121 ENLSGEGEQYIYHSKGHALNPGQRNWTRYQPWESK 155


>Glyma18g16750.1 
          Length = 142

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/67 (77%), Positives = 56/67 (83%)

Query: 65  ENTINGRHRWVEYAEKKRYNASQVPPEWHGWLHFITDHTGDELLLLKPKRYGVEHKENLS 124
           E+ +  RHRWVEYAEK RYNASQVP EWHGWLHFI D TG ELLLLKPKRYG EHKEN S
Sbjct: 7   ESMMFCRHRWVEYAEKTRYNASQVPAEWHGWLHFIIDLTGGELLLLKPKRYGAEHKENWS 66

Query: 125 GEGEQFI 131
           GE +Q+I
Sbjct: 67  GEVKQYI 73


>Glyma02g10440.1 
          Length = 56

 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 50/55 (90%), Gaps = 2/55 (3%)

Query: 74  WVEYAEKKRYNASQVPPEWHGWLHFITDHTGDE--LLLLKPKRYGVEHKENLSGE 126
           WVEYA+K RYNASQVP EWHGWLHFITDHTGDE  LLLLK KRYGVEHKENLSGE
Sbjct: 1   WVEYAKKTRYNASQVPAEWHGWLHFITDHTGDELQLLLLKSKRYGVEHKENLSGE 55