Miyakogusa Predicted Gene

Lj3g3v0642480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0642480.1 Non Chatacterized Hit- tr|K3ZY46|K3ZY46_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si031528,65.91,5e-19,Ribosomal_L18p,Ribosomal protein L18/L5; no
description,NULL; Translational machinery components,NUL,CUFF.41060.1
         (88 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g24110.3                                                       158   2e-39
Glyma03g24110.2                                                       158   2e-39
Glyma03g24110.1                                                       158   2e-39
Glyma13g20570.1                                                        96   8e-21
Glyma10g06280.1                                                        86   1e-17
Glyma02g47730.1                                                        49   2e-06

>Glyma03g24110.3 
          Length = 128

 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 81/88 (92%)

Query: 1  MTLMKRYVLRLFTSLKYITANVVDRNNGRIVATSSTVEHAMKESLECGRSCNAKAAAIVG 60
          M +MKRYVLRLF SLKYITANVVDRNNGRIV +SST EH +KESLECGRSCNAKAAA+VG
Sbjct: 1  MPVMKRYVLRLFISLKYITANVVDRNNGRIVVSSSTAEHTIKESLECGRSCNAKAAAVVG 60

Query: 61 EVLARRLKVEGLNEGEGRGIHVNVKKEV 88
          EVLARRLKVEGLNEGEGRGIH N+ KEV
Sbjct: 61 EVLARRLKVEGLNEGEGRGIHANITKEV 88


>Glyma03g24110.2 
          Length = 128

 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 81/88 (92%)

Query: 1  MTLMKRYVLRLFTSLKYITANVVDRNNGRIVATSSTVEHAMKESLECGRSCNAKAAAIVG 60
          M +MKRYVLRLF SLKYITANVVDRNNGRIV +SST EH +KESLECGRSCNAKAAA+VG
Sbjct: 1  MPVMKRYVLRLFISLKYITANVVDRNNGRIVVSSSTAEHTIKESLECGRSCNAKAAAVVG 60

Query: 61 EVLARRLKVEGLNEGEGRGIHVNVKKEV 88
          EVLARRLKVEGLNEGEGRGIH N+ KEV
Sbjct: 61 EVLARRLKVEGLNEGEGRGIHANITKEV 88


>Glyma03g24110.1 
          Length = 128

 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 81/88 (92%)

Query: 1  MTLMKRYVLRLFTSLKYITANVVDRNNGRIVATSSTVEHAMKESLECGRSCNAKAAAIVG 60
          M +MKRYVLRLF SLKYITANVVDRNNGRIV +SST EH +KESLECGRSCNAKAAA+VG
Sbjct: 1  MPVMKRYVLRLFISLKYITANVVDRNNGRIVVSSSTAEHTIKESLECGRSCNAKAAAVVG 60

Query: 61 EVLARRLKVEGLNEGEGRGIHVNVKKEV 88
          EVLARRLKVEGLNEGEGRGIH N+ KEV
Sbjct: 61 EVLARRLKVEGLNEGEGRGIHANITKEV 88


>Glyma13g20570.1 
          Length = 98

 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 64/88 (72%)

Query: 1  MTLMKRYVLRLFTSLKYITANVVDRNNGRIVATSSTVEHAMKESLECGRSCNAKAAAIVG 60
          M +M RY LR+F S K++TANVV+ NNGR+VA + +VEHA++ + E GR C+A+AAA V 
Sbjct: 1  MGMMMRYALRVFVSGKHMTANVVEGNNGRVVAGALSVEHALRGAFEWGRGCDARAAASVR 60

Query: 61 EVLARRLKVEGLNEGEGRGIHVNVKKEV 88
          EVLA RLK E    G G G+H + ++E+
Sbjct: 61 EVLAMRLKTEAPELGGGGGVHFDAEREI 88


>Glyma10g06280.1 
          Length = 117

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 66/88 (75%), Gaps = 2/88 (2%)

Query: 3  LMKRYVLRLFTSLKYITANVVDRNNGRIVATSSTVEHAMKESLECGRSCNAKAAAIVGEV 62
          +M+RYVLR+F S K++TANVV+ N  R+VA +STVEHA++ + E G+ C+A+AAA VGEV
Sbjct: 1  MMRRYVLRVFVSGKHMTANVVEGNRERVVAGASTVEHALRGAFEWGKGCDARAAACVGEV 60

Query: 63 LARRLKVEG--LNEGEGRGIHVNVKKEV 88
          LA RLK E   L  G G G+H + ++E+
Sbjct: 61 LAMRLKTEAPELGVGGGGGVHFDAEREI 88


>Glyma02g47730.1 
          Length = 114

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 7/85 (8%)

Query: 3  LMKRYVLRLFTSLKYITANVVDRNNGRIVATSSTVEHAMKESLECGRSCNAKAAAIVGEV 62
           +K YVL++  + KY++A V+      + +++S+ E A++ SLE  R  +  AAA +G++
Sbjct: 15 FLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETSR--DVAAAAKIGKI 72

Query: 63 LARRLKVEGLNEGEGRGIHVNVKKE 87
          LA RL ++ +       + V++K+E
Sbjct: 73 LAERLLLKDIP-----AVSVHLKRE 92