Miyakogusa Predicted Gene

Lj3g3v0618200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0618200.1 tr|G7LDH4|G7LDH4_MEDTR Retrograde Golgi transport
protein RGP1-like protein OS=Medicago truncatula G,85.53,0,seg,NULL;
Rgp1,Reduced growth phenotype protein 1; SUBFAMILY NOT NAMED,NULL;
REDUCED GROWTH PHENOTYP,CUFF.41110.1
         (530 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g12810.1                                                       746   0.0  
Glyma03g24540.1                                                       470   e-132
Glyma03g24570.1                                                       233   4e-61

>Glyma07g12810.1 
          Length = 610

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/573 (67%), Positives = 422/573 (73%), Gaps = 72/573 (12%)

Query: 29  PTLKLETDKQVYRPGDPVVVTIQISNPSNGYSFLMERLSFEIKGIEKLDTQWFATQKPLP 88
           PTLKLETD+QVYRPGDPV+VTIQISNP+ GYSFLMERL FEI+GIEKLDTQWFATQKP+P
Sbjct: 39  PTLKLETDRQVYRPGDPVIVTIQISNPAKGYSFLMERLGFEIRGIEKLDTQWFATQKPMP 98

Query: 89  GSKQRRGEHVFLDCSCPILVANQIVNAGTSKSYVVRTLLPSIIPPSYKGSNIRYLYYVKS 148
           GSKQ+RGEH FL+CS P+LVANQIVNAG SKSYVVRT LPSIIPPSYKGS+IRYLYY+KS
Sbjct: 99  GSKQKRGEHAFLECSTPVLVANQIVNAGASKSYVVRTQLPSIIPPSYKGSSIRYLYYIKS 158

Query: 149 AVTGGWLILENGQ----------------------------------------------- 161
           A+TG W+I ENGQ                                               
Sbjct: 159 ALTGEWIIYENGQSRIILKQEKKSIVPPMFCAFLSFILLFHDFPSTFGIGKHLWGLKPCI 218

Query: 162 -SHAETSNDVT---DLDVRIPLQVWINQKSSGFPTDE----------------DIVPLTT 201
            S     +D+     L+VRIPLQ+WINQKSS FP D+                DIVPLTT
Sbjct: 219 FSREHLQDDLCFKPSLEVRIPLQLWINQKSSAFPMDDAYAIDGYMEDLGPVRNDIVPLTT 278

Query: 202 VQPDIFWKEMDGDADWVRANDFYDGIEEGYXXXXXXXXXXXXYNPSKENLHXXXXXXXXX 261
           VQ DIFWKEMDGDADW+RAND YDG+E+GY            YNP +E+LH         
Sbjct: 279 VQLDIFWKEMDGDADWIRANDMYDGVEDGYDSSRDDISSVSSYNPMRESLHRGFGSSLSL 338

Query: 262 XXXXXXXXXXXXXXXEIHRTSLSSNMALPRLSVA--VSDPGADVLSTQKSFGIVSPSDQQ 319
                          E  RTSLSSNMALPRLSVA  +SD GADVLSTQKSF IVSP++QQ
Sbjct: 339 RSSSARSLSRDASTLEGFRTSLSSNMALPRLSVAEVLSDSGADVLSTQKSFAIVSPNEQQ 398

Query: 320 QFRKPFSADDDAGVSSSPEAGA-ESLSSEGFIRGKSYNIRLDDQVLLKFSPKNSDSTHYF 378
           + RK FSA+DD GVSSSPEAGA ESLSSEGFIRG+SYNIRLDDQVLLKFSP+NSDST+YF
Sbjct: 399 KLRKTFSAEDDVGVSSSPEAGAVESLSSEGFIRGRSYNIRLDDQVLLKFSPRNSDSTYYF 458

Query: 379 SDVIGGTLTFFHEEGARRCLEISVTLETSETINRRFVHPSRRNSPTITKVQSDHHEVVAD 438
           SD+IGGTLTFFHE GARRCLEIS+TLETSETINRRFVHPSRRNSPTITKVQSDHHEVVAD
Sbjct: 459 SDMIGGTLTFFHE-GARRCLEISITLETSETINRRFVHPSRRNSPTITKVQSDHHEVVAD 517

Query: 439 LVQTSFLFSVPMDGPMSFSTPHVSVQWVLRFEFFTTPKHVDWSKYEHPLLIEGRERTEWV 498
           LVQTSFLFS+PMDGPMSFST HVSVQWVLRFEFFTTPKHVDW KYEHPLLIEGRE+TEWV
Sbjct: 518 LVQTSFLFSIPMDGPMSFSTQHVSVQWVLRFEFFTTPKHVDWKKYEHPLLIEGREKTEWV 577

Query: 499 LPITVHX-XXXXXXXXXXXXEKLFSLDPLWVQN 530
           LPITVH              EKLFSLDP+WV N
Sbjct: 578 LPITVHAPPPRGAPASGTRSEKLFSLDPMWVHN 610


>Glyma03g24540.1 
          Length = 322

 Score =  470 bits (1209), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/323 (73%), Positives = 257/323 (79%), Gaps = 4/323 (1%)

Query: 211 MDGDADWVRANDFYDGIEEGYXXXXXXXXXXXXYNPSKENLHXXXXXXXXXXXXXXXXXX 270
           MDGDADWVRAND YDG+EEGY            YNP +E+L+                  
Sbjct: 1   MDGDADWVRANDMYDGVEEGYDSSRDDISSVSSYNPMRESLNRGFGSSLSLRSSSARSLT 60

Query: 271 XXXXXXEIHRTSLSSNMALPRLSVA--VSDPGADVLSTQKSFGIVSPSDQQQFRKPFSAD 328
                 E  RTSLSSNMALPRLSVA  +SD GADVLSTQKSF IVSP++QQ+ RK FSA+
Sbjct: 61  RDVSTLEGFRTSLSSNMALPRLSVAEVLSDSGADVLSTQKSFAIVSPNEQQKLRKTFSAE 120

Query: 329 DDAGVSSSPEAGA-ESLSSEGFIRGKSYNIRLDDQVLLKFSPKNSDSTHYFSDVIGGTLT 387
           DD GVSSSPEAGA ES+SSEGFIRG+SYNIRLDDQVLLKFSPKNSDST+YFSD+IGGTLT
Sbjct: 121 DDVGVSSSPEAGAVESISSEGFIRGRSYNIRLDDQVLLKFSPKNSDSTYYFSDMIGGTLT 180

Query: 388 FFHEEGARRCLEISVTLETSETINRRFVHPSRRNSPTITKVQSDHHEVVADLVQTSFLFS 447
           FFHE GARRCLEIS+TLETSETINRRFVH SRRNSPTITKVQSDHHEVVADLVQTSFLFS
Sbjct: 181 FFHE-GARRCLEISITLETSETINRRFVHHSRRNSPTITKVQSDHHEVVADLVQTSFLFS 239

Query: 448 VPMDGPMSFSTPHVSVQWVLRFEFFTTPKHVDWSKYEHPLLIEGRERTEWVLPITVHXXX 507
           +PMDGPMSFST HVSVQWVLRFEFFTTPKHVDW KYEHPLLIEGRE+TEWVLPITVH   
Sbjct: 240 IPMDGPMSFSTQHVSVQWVLRFEFFTTPKHVDWKKYEHPLLIEGREKTEWVLPITVHAPP 299

Query: 508 XXXXXXXXXXEKLFSLDPLWVQN 530
                     +KLFSLDP+WV N
Sbjct: 300 PRAPASGTRSDKLFSLDPMWVHN 322


>Glyma03g24570.1 
          Length = 237

 Score =  233 bits (594), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 115/168 (68%), Positives = 130/168 (77%), Gaps = 23/168 (13%)

Query: 10  GGGDSRLVDNNSSKGEPLVPTLKLETDKQVYRPGDPVVVTIQISNPSNGYSFLMERLSFE 69
           GGGD   V         + PTLKLETD+QVYRPGDPV+VTIQISNP+NGYSFLMERL FE
Sbjct: 29  GGGDELAV---------VQPTLKLETDRQVYRPGDPVIVTIQISNPANGYSFLMERLGFE 79

Query: 70  IKGIEKLDTQWFATQKPLPGSKQRRGEHVFLDCSCPILVANQIVNAGTSKSYVVRTLLPS 129
           I+GIEKLDTQWFATQK +PGSKQRRGE+ FL+CS PIL+ANQI+NAG SKSYV       
Sbjct: 80  IRGIEKLDTQWFATQKLMPGSKQRRGENAFLECSTPILIANQILNAGASKSYV------- 132

Query: 130 IIPPSYKGSNIRYLYYVKSAVTGGWLILENGQSHAETSNDVTDLDVRI 177
                  GSNIRYLYY+KSA+TGGW+I ENGQS  E+ NDVTDL V +
Sbjct: 133 -------GSNIRYLYYIKSALTGGWIIYENGQSRLESKNDVTDLVVSV 173