Miyakogusa Predicted Gene

Lj3g3v0582180.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0582180.1 tr|B9MUQ8|B9MUQ8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_589877 PE=3 SV=1,83.02,9e-16,MUTS
HOMOLOG 4, MSH4,NULL; DNA MISMATCH REPAIR MUTS RELATED PROTEINS,NULL;
no description,NULL; DNA ,gene.g45678.t1.1
         (397 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g03750.1                                                       489   e-138
Glyma08g26960.1                                                       155   8e-38
Glyma19g06830.1                                                       123   3e-28
Glyma13g07980.1                                                        59   1e-08
Glyma14g28030.1                                                        56   7e-08

>Glyma11g03750.1 
          Length = 759

 Score =  489 bits (1258), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/326 (74%), Positives = 256/326 (78%), Gaps = 17/326 (5%)

Query: 1   MNIDXXXXXXXXXXXXQPLKDIETISARLDCLDELMSNEQLFFALCQVLRKFPKETDRVL 60
           MNID            QPLKDIETI+ARLDCLDELMSNEQLFF LCQ+LRKFPKETDRVL
Sbjct: 165 MNIDSTRSRLLRANLLQPLKDIETINARLDCLDELMSNEQLFFGLCQILRKFPKETDRVL 224

Query: 61  CHFCFKPKKDTIEALAVDRAKKSQMLVSSVIXXXXXXXXXXXXSKVLKDAKSSLLSNIYK 120
           CHFCFK KK T EALAVDRAKKSQ+LVSSVI            SKVLKD KSSLLSNIYK
Sbjct: 225 CHFCFKAKKVTAEALAVDRAKKSQVLVSSVILLKTALDALPLLSKVLKDVKSSLLSNIYK 284

Query: 121 SVCANEKYDRIKERIGEIIDEDVLHARVPFVACTQQCFAVKAGIDGLLDISRRSFCETSE 180
           SVC NEKYD I++RIGE+IDEDVLHARVPFVACTQQCFAVKAGIDGLLDISRR+FCETSE
Sbjct: 285 SVCENEKYDLIRKRIGEVIDEDVLHARVPFVACTQQCFAVKAGIDGLLDISRRAFCETSE 344

Query: 181 AIHNLANNYREEFKLPNLKLIFKNRQGFHFVIPQKNVQGKLPRKFIQ------------- 227
           AIHNLANNYRE+FKLPNLKL +KNRQGFHFVIPQKN+QGKLP KFIQ             
Sbjct: 345 AIHNLANNYREDFKLPNLKLTYKNRQGFHFVIPQKNIQGKLPSKFIQVVKHGNNIRCSSL 404

Query: 228 ----LNARNKSAAAECYTRTEVCLEELMDAIRENVSVXXXXXXXXXXXDMIVNSFAHMIS 283
               LNARNKSAAAECYTRTEVCLEELMD IRENVSV           DMIVNSFAHMIS
Sbjct: 405 ELASLNARNKSAAAECYTRTEVCLEELMDDIRENVSVLTLLAEVLCLLDMIVNSFAHMIS 464

Query: 284 TKPVDRYTRPEFTGNTPFDLFTPEGP 309
           TKPVDRYTRPEFT N P  + +   P
Sbjct: 465 TKPVDRYTRPEFTENGPLAIDSGRHP 490



 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/91 (83%), Positives = 84/91 (92%)

Query: 307 EGPKHIPHYGLLLAEVAGLPSPVIENARMITSRISEKEMRRMKVNCLQYHSIQRAYHVAQ 366
           EG K IPHYGLLLAEVAGLPS V+E ARMITSRISEKE++RM+VNCLQ+HSIQ+AYHVAQ
Sbjct: 667 EGSKRIPHYGLLLAEVAGLPSSVVETARMITSRISEKEVKRMEVNCLQHHSIQKAYHVAQ 726

Query: 367 RLLCLKYSNQDEDTIRQALRNLKETCLNHKL 397
           RLLCLKY NQDEDTIRQALRNLKE+C+  KL
Sbjct: 727 RLLCLKYCNQDEDTIRQALRNLKESCIKEKL 757


>Glyma08g26960.1 
          Length = 298

 Score =  155 bits (392), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 89/162 (54%), Positives = 95/162 (58%), Gaps = 55/162 (33%)

Query: 105 KVLKDAKSSLLSNIYKSVCANEKYDRIKERIGEIIDEDVLHARVPFVACTQQCFAVKAGI 164
           +VLKD KS  LSNIYKSVC NEKYD I++R   I                          
Sbjct: 34  QVLKDVKSFFLSNIYKSVCENEKYDLIRKRYAYIF------------------------- 68

Query: 165 DGLLDISRRSFCETSEAIHNLANNYREEFKLPNLKLIFKNRQGFHFVIPQKNVQGKLPRK 224
                     FC T   IHNLANNYRE+FKLPNLKL +KNRQGFHFVIPQKN+QGKLP K
Sbjct: 69  ----------FCMT---IHNLANNYREDFKLPNLKLTYKNRQGFHFVIPQKNIQGKLPSK 115

Query: 225 FIQ-----------------LNARNKSAAAECYTRTEVCLEE 249
           FIQ                 LNARNKSAAAECYTRTEVCLEE
Sbjct: 116 FIQVVKHGNNIRCSSLELAFLNARNKSAAAECYTRTEVCLEE 157


>Glyma19g06830.1 
          Length = 221

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 63/85 (74%)

Query: 228 LNARNKSAAAECYTRTEVCLEELMDAIRENVSVXXXXXXXXXXXDMIVNSFAHMISTKPV 287
           LNARNKSAAAECYTRTEVCLEELMD IRENVSV           DM VNSFAHMISTKPV
Sbjct: 84  LNARNKSAAAECYTRTEVCLEELMDDIRENVSVLTLLAEVLCLLDMTVNSFAHMISTKPV 143

Query: 288 DRYTRPEFTGNTPFDLFTPEGPKHI 312
           DRYTRPEFT N P  + + +   HI
Sbjct: 144 DRYTRPEFTENGPLAIDSEQAINHI 168


>Glyma13g07980.1 
          Length = 353

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/25 (100%), Positives = 25/25 (100%)

Query: 273 MIVNSFAHMISTKPVDRYTRPEFTG 297
           MIVNSFAHMISTKPVDRYTRPEFTG
Sbjct: 1   MIVNSFAHMISTKPVDRYTRPEFTG 25


>Glyma14g28030.1 
          Length = 83

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/26 (92%), Positives = 25/26 (96%)

Query: 273 MIVNSFAHMISTKPVDRYTRPEFTGN 298
           MIVNSFAHMISTKPVDRYTRPEFT +
Sbjct: 1   MIVNSFAHMISTKPVDRYTRPEFTAS 26